RNA–Protein interactions for RNA: ENST00000580061.5

CSNK1D-212, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 578 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-212ENST00000580061 NISCHQ9Y2I1 1504 aa37.71■■■■□ 3.63
CSNK1D-212ENST00000580061 CCDC180Q9P1Z9 1646 aa33.31■■■□□ 2.92
CSNK1D-212ENST00000580061 ABCC9O60706 1549 aa32.01■■■□□ 2.72
CSNK1D-212ENST00000580061 ZCCHC6Q5VYS8 1495 aaKnown RBP31.53■■■□□ 2.64
CSNK1D-212ENST00000580061 DCAF1Q9Y4B6 1507 aa31.24■■■□□ 2.59
CSNK1D-212ENST00000580061 DCAF8L2P0C7V8 631 aa31.22■■■□□ 2.59
CSNK1D-212ENST00000580061 NACADO15069 1562 aa31.16■■■□□ 2.58
CSNK1D-212ENST00000580061 MYO15BQ96JP2 1530 aa31.15■■■□□ 2.58
CSNK1D-212ENST00000580061 RB1CC1Q8TDY2 1594 aa31.06■■■□□ 2.56
CSNK1D-212ENST00000580061 UNC13AQ9UPW8 1703 aa30.46■■■□□ 2.47
CSNK1D-212ENST00000580061 SCRIBQ14160 1630 aa30.42■■■□□ 2.46
CSNK1D-212ENST00000580061 BICRAQ9NZM4 1560 aa30.13■■■□□ 2.41
CSNK1D-212ENST00000580061 SHROOM4Q9ULL8 1493 aa30.09■■■□□ 2.41
CSNK1D-212ENST00000580061 PABPN1Q86U42 306 aaKnown RBP eCLIP29.99■■■□□ 2.39
CSNK1D-212ENST00000580061 CECR2Q9BXF3 1484 aa29.31■■■□□ 2.28
CSNK1D-212ENST00000580061 EIF4G1Q04637 1599 aaKnown RBP29.27■■■□□ 2.28
CSNK1D-212ENST00000580061 BAZ1AQ9NRL2 1556 aaPredicted RBP29.18■■■□□ 2.26
CSNK1D-212ENST00000580061 SMARCA4P51532 1647 aa29.16■■■□□ 2.26
CSNK1D-212ENST00000580061 MROH2BQ7Z745 1585 aa29.08■■■□□ 2.25
CSNK1D-212ENST00000580061 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
CSNK1D-212ENST00000580061 RSF1Q96T23 1441 aaPredicted RBP28.93■■■□□ 2.22
CSNK1D-212ENST00000580061 DNAJC5BQ9UF47 199 aa28.87■■■□□ 2.21
CSNK1D-212ENST00000580061 PEG3Q9GZU2 1588 aa28.87■■■□□ 2.21
CSNK1D-212ENST00000580061 SMARCA2P51531 1590 aa28.84■■■□□ 2.21
CSNK1D-212ENST00000580061 ATAD2BQ9ULI0 1458 aa28.83■■■□□ 2.21
CSNK1D-212ENST00000580061 WIZO95785 1651 aa28.82■■■□□ 2.2
CSNK1D-212ENST00000580061 NCAPD3P42695 1498 aa28.73■■■□□ 2.19
CSNK1D-212ENST00000580061 HMGXB3Q12766 1538 aa28.65■■■□□ 2.18
CSNK1D-212ENST00000580061 BAZ1BQ9UIG0 1483 aaKnown RBP28.62■■■□□ 2.17
CSNK1D-212ENST00000580061 SUPT5HO00267 1087 aaKnown RBP28.58■■■□□ 2.17
CSNK1D-212ENST00000580061 TOP2AP11388 1531 aaKnown RBP28.52■■■□□ 2.16
CSNK1D-212ENST00000580061 CCDC88BA6NC98 1476 aa28.17■■■□□ 2.1
CSNK1D-212ENST00000580061 LAMC3Q9Y6N6 1575 aa27.91■■■□□ 2.06
CSNK1D-212ENST00000580061 CADPSQ9ULU8 1353 aa27.91■■■□□ 2.06
CSNK1D-212ENST00000580061 NESP48681 1621 aa27.89■■■□□ 2.05
CSNK1D-212ENST00000580061 CFTRP13569 1480 aa27.88■■■□□ 2.05
CSNK1D-212ENST00000580061 PRDM2Q13029 1718 aa27.81■■■□□ 2.04
CSNK1D-212ENST00000580061 PDS5BQ9NTI5 1447 aa27.66■■■□□ 2.02
CSNK1D-212ENST00000580061 KIF21AQ7Z4S6 1674 aa27.62■■■□□ 2.01
CSNK1D-212ENST00000580061 FANCD2Q9BXW9 1451 aa27.6■■■□□ 2.01
CSNK1D-212ENST00000580061 ERCC6Q03468 1493 aa27.53■■■□□ 2
CSNK1D-212ENST00000580061 CEP164Q9UPV0 1460 aa27.51■■■□□ 2
CSNK1D-212ENST00000580061 THOC2Q8NI27 1593 aaKnown RBP27.37■■□□□ 1.97
CSNK1D-212ENST00000580061 MRC2Q9UBG0 1479 aa27.36■■□□□ 1.97
CSNK1D-212ENST00000580061 ABCC8Q09428 1581 aa27.33■■□□□ 1.97
CSNK1D-212ENST00000580061 URB2Q14146 1524 aaKnown RBP27.31■■□□□ 1.96
CSNK1D-212ENST00000580061 WDR62O43379 1518 aa27.27■■□□□ 1.96
CSNK1D-212ENST00000580061 DNMBPQ6XZF7 1577 aa27.26■■□□□ 1.96
CSNK1D-212ENST00000580061 WRNQ14191 1432 aaPredicted RBP eCLIP27.25■■□□□ 1.95
CSNK1D-212ENST00000580061 CUX1P39880 1505 aa27.24■■□□□ 1.95
CSNK1D-212ENST00000580061 TOPBP1Q92547 1522 aa27.23■■□□□ 1.95
CSNK1D-212ENST00000580061 SYNJ1O43426 1573 aa27.19■■□□□ 1.94
CSNK1D-212ENST00000580061 BIVM-ERCC5R4GMW8 1640 aa27.19■■□□□ 1.94
CSNK1D-212ENST00000580061 TOP2BQ02880 1626 aa27.17■■□□□ 1.94
CSNK1D-212ENST00000580061 CUX2O14529 1486 aa27.06■■□□□ 1.92
CSNK1D-212ENST00000580061 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
CSNK1D-212ENST00000580061 POLA1P09884 1462 aaPredicted RBP27.04■■□□□ 1.92
CSNK1D-212ENST00000580061 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
CSNK1D-212ENST00000580061 TRIM41Q8WV44 630 aa26.97■■□□□ 1.91
CSNK1D-212ENST00000580061 TARBP1Q13395 1621 aaKnown RBP26.93■■□□□ 1.9
CSNK1D-212ENST00000580061 SOGA1O94964 1423 aa26.92■■□□□ 1.9
CSNK1D-212ENST00000580061 IFT140Q96RY7 1462 aa26.91■■□□□ 1.9
CSNK1D-212ENST00000580061 RAD54L2Q9Y4B4 1467 aa26.91■■□□□ 1.9
CSNK1D-212ENST00000580061 WDR97A6NE52 1622 aa26.87■■□□□ 1.89
CSNK1D-212ENST00000580061 ABCA10Q8WWZ4 1543 aa26.81■■□□□ 1.88
CSNK1D-212ENST00000580061 ZNF608Q9ULD9 1512 aaPredicted RBP26.75■■□□□ 1.87
CSNK1D-212ENST00000580061 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
CSNK1D-212ENST00000580061 ABCA5Q8WWZ7 1642 aa26.7■■□□□ 1.86
CSNK1D-212ENST00000580061 TDRD9Q8NDG6 1382 aaKnown RBP26.69■■□□□ 1.86
CSNK1D-212ENST00000580061 AQRO60306 1485 aaKnown RBP eCLIP26.66■■□□□ 1.861e-7■■■■■ 31.5
CSNK1D-212ENST00000580061 KIF27Q86VH2 1401 aa26.64■■□□□ 1.85
CSNK1D-212ENST00000580061 GAPVD1Q14C86 1478 aa26.63■■□□□ 1.85
CSNK1D-212ENST00000580061 PBRM1Q86U86 1689 aa26.6■■□□□ 1.85
CSNK1D-212ENST00000580061 RUSC2Q8N2Y8 1516 aa26.6■■□□□ 1.85
CSNK1D-212ENST00000580061 GRIN2BQ13224 1484 aa26.55■■□□□ 1.84
CSNK1D-212ENST00000580061 ERICH3Q5RHP9 1530 aa26.51■■□□□ 1.83
CSNK1D-212ENST00000580061 EEA1Q15075 1411 aa26.49■■□□□ 1.83
CSNK1D-212ENST00000580061 IGF1RP08069 1367 aa26.46■■□□□ 1.83
CSNK1D-212ENST00000580061 SNAPC4Q5SXM2 1469 aa26.44■■□□□ 1.82
CSNK1D-212ENST00000580061 MAGI1Q96QZ7 1491 aaPredicted RBP26.42■■□□□ 1.82
CSNK1D-212ENST00000580061 CUL7Q14999 1698 aa26.41■■□□□ 1.82
CSNK1D-212ENST00000580061 ADAMTS12P58397 1594 aa26.39■■□□□ 1.82
CSNK1D-212ENST00000580061 FAM9AQ8IZU1 332 aaPredicted RBP26.39■■□□□ 1.82
CSNK1D-212ENST00000580061 CSRNP3Q8WYN3 585 aa26.36■■□□□ 1.81
CSNK1D-212ENST00000580061 FHAD1B1AJZ9 1412 aa26.33■■□□□ 1.81
CSNK1D-212ENST00000580061 SYNJ2O15056 1496 aa26.31■■□□□ 1.8
CSNK1D-212ENST00000580061 CARMIL1Q5VZK9 1371 aa26.31■■□□□ 1.8
CSNK1D-212ENST00000580061 CHD1O14646 1710 aa26.29■■□□□ 1.8
CSNK1D-212ENST00000580061 PRXQ9BXM0 1461 aa26.28■■□□□ 1.8
CSNK1D-212ENST00000580061 RAPGEF2Q9Y4G8 1499 aa26.23■■□□□ 1.79
CSNK1D-212ENST00000580061 CHMP7Q8WUX9 453 aaPredicted RBP26.22■■□□□ 1.79
CSNK1D-212ENST00000580061 GRIN2AQ12879 1464 aa26.22■■□□□ 1.79
CSNK1D-212ENST00000580061 KIF21BO75037 1637 aa26.21■■□□□ 1.79
CSNK1D-212ENST00000580061 FBLN2P98095 1184 aa26.2■■□□□ 1.78
CSNK1D-212ENST00000580061 CEP170Q5SW79 1584 aa26.08■■□□□ 1.77
CSNK1D-212ENST00000580061 GOLGA3Q08378 1498 aa26.08■■□□□ 1.77
CSNK1D-212ENST00000580061 NUP160Q12769 1436 aa26.07■■□□□ 1.76
CSNK1D-212ENST00000580061 CTTNBP2Q8WZ74 1663 aa26.03■■□□□ 1.76
CSNK1D-212ENST00000580061 OSCARQ8IYS5 282 aa26.01■■□□□ 1.75
CSNK1D-212ENST00000580061 EHMT2Q96KQ7 1210 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms