Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.27e-9■■■■■ 38.8
UPF1Q92900 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC27.57■■■□□ 27e-9■■■■■ 38.8
UPF1Q92900 TNFRSF12A-203ENST00000571351 1678 ntTSL 225.91■■□□□ 1.747e-9■■■■■ 38.8
UPF1Q92900 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.5■■□□□ 1.037e-9■■■■■ 38.8
UPF1Q92900 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.01■■□□□ 1.437e-9■■■■■ 38.8
UPF1Q92900 ABHD4-203ENST00000428304 3366 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.811e-7■■■■■ 38.8
UPF1Q92900 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.789e-9■■■■■ 38.7
UPF1Q92900 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.189e-9■■■■■ 38.7
UPF1Q92900 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.061e-11■■■■■ 38.7
UPF1Q92900 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.023e-8■■■■■ 38.7
UPF1Q92900 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.687e-9■■■■■ 38.7
UPF1Q92900 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.172e-11■■■■■ 38.6
UPF1Q92900 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC18.51■□□□□ 0.559e-8■■■■■ 38.6
UPF1Q92900 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC12.83□□□□□ -0.362e-9■■■■■ 38.6
UPF1Q92900 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.482e-9■■■■■ 38.6
UPF1Q92900 AMBRA1-211ENST00000533727 4817 ntTSL 1 (best) BASIC11.98□□□□□ -0.492e-9■■■■■ 38.6
UPF1Q92900 AMBRA1-202ENST00000458649 5351 ntTSL 2 BASIC11.01□□□□□ -0.652e-9■■■■■ 38.6
UPF1Q92900 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.487e-15■■■■■ 38.6
UPF1Q92900 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.137e-15■■■■■ 38.6
UPF1Q92900 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.732e-7■■■■■ 38.6
UPF1Q92900 RNFT2-205ENST00000547718 1761 ntTSL 223.6■■□□□ 1.375e-8■■■■■ 38.6
UPF1Q92900 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.81■□□□□ 0.765e-8■■■■■ 38.6
UPF1Q92900 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.81■□□□□ 0.765e-8■■■■■ 38.6
UPF1Q92900 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.84■□□□□ 0.615e-8■■■■■ 38.6
UPF1Q92900 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.235e-8■■■■■ 38.6
UPF1Q92900 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.348e-8■■■■■ 38.6
UPF1Q92900 RNFT2-206ENST00000551251 739 ntTSL 311.62□□□□□ -0.555e-8■■■■■ 38.6
UPF1Q92900 SEPT9-224ENST00000589246 594 ntTSL 218.01■□□□□ 0.473e-50■■■■■ 38.6
UPF1Q92900 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.261e-9■■■■■ 38.6
UPF1Q92900 TRIM35-204ENST00000521283 619 ntTSL 214.27□□□□□ -0.139e-7■■■■■ 38.6
UPF1Q92900 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.399e-7■■■■■ 38.6
UPF1Q92900 DLST-202ENST00000334220 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.035e-7■■■■■ 38.5
UPF1Q92900 TMEM104-206ENST00000584171 574 ntTSL 219.54■□□□□ 0.721e-7■■■■■ 38.5
UPF1Q92900 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.06■□□□□ 0.966e-7■■■■■ 38.5
UPF1Q92900 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.836e-7■■■■■ 38.5
UPF1Q92900 PDK2-213ENST00000512204 806 ntTSL 214.96□□□□□ -0.014e-22■■■■■ 38.5
UPF1Q92900 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.083e-10■■■■■ 38.5
UPF1Q92900 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.983e-10■■■■■ 38.5
UPF1Q92900 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.416e-8■■■■■ 38.5
UPF1Q92900 AFMID-208ENST00000588800 647 ntTSL 2 BASIC16.87■□□□□ 0.294e-16■■■■■ 38.5
UPF1Q92900 AFMID-211ENST00000589664 754 ntTSL 515.53■□□□□ 0.084e-16■■■■■ 38.5
UPF1Q92900 AFMID-206ENST00000587750 541 ntTSL 315.34■□□□□ 0.054e-16■■■■■ 38.5
UPF1Q92900 AFMID-207ENST00000588199 778 ntTSL 514.82□□□□□ -0.044e-16■■■■■ 38.5
UPF1Q92900 AFMID-214ENST00000591952 582 ntTSL 2 BASIC14.67□□□□□ -0.064e-16■■■■■ 38.5
UPF1Q92900 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.569e-10■■■■■ 38.5
UPF1Q92900 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC26.79■■□□□ 1.889e-8■■■■■ 38.5
UPF1Q92900 MIR4647-201ENST00000583964 80 ntBASIC15.65■□□□□ 0.17e-29■■■■■ 38.5
UPF1Q92900 PITPNA-207ENST00000575288 1264 ntTSL 238.47■■■■□ 3.757e-10■■■■■ 38.4
UPF1Q92900 SNX12-205ENST00000490561 862 ntTSL 1 (best)16.78■□□□□ 0.289e-9■■■■■ 38.4
UPF1Q92900 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.493e-9■■■■■ 38.4
UPF1Q92900 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.313e-9■■■■■ 38.4
UPF1Q92900 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC15.98■□□□□ 0.153e-9■■■■■ 38.4
UPF1Q92900 CEPT1-209ENST00000498239 1957 ntTSL 1 (best)11.78□□□□□ -0.523e-9■■■■■ 38.4
UPF1Q92900 CEPT1-201ENST00000357172 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.533e-9■■■■■ 38.4
UPF1Q92900 CEPT1-210ENST00000545121 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.553e-9■■■■■ 38.4
UPF1Q92900 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC9.97□□□□□ -0.813e-9■■■■■ 38.4
UPF1Q92900 CEPT1-206ENST00000478042 2175 ntTSL 59.85□□□□□ -0.833e-9■■■■■ 38.4
UPF1Q92900 CEPT1-203ENST00000467362 5300 ntTSL 24.64□□□□□ -1.673e-9■■■■■ 38.4
UPF1Q92900 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.245e-8■■■■■ 38.3
UPF1Q92900 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.07■□□□□ 0.641e-16■■■■■ 38.3
UPF1Q92900 RRBP1-207ENST00000468428 2200 ntTSL 216.57■□□□□ 0.241e-16■■■■■ 38.3
UPF1Q92900 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.011e-16■■■■■ 38.3
UPF1Q92900 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.231e-16■■■■■ 38.3
UPF1Q92900 RRBP1-210ENST00000610403 3309 ntTSL 5 BASIC13.18□□□□□ -0.31e-16■■■■■ 38.3
UPF1Q92900 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.421e-16■■■■■ 38.3
UPF1Q92900 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.51e-16■■■■■ 38.3
UPF1Q92900 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.65■■■□□ 2.661e-8■■■■■ 38.3
UPF1Q92900 SLC25A1-205ENST00000470922 1598 ntTSL 230.42■■■□□ 2.461e-8■■■■■ 38.3
UPF1Q92900 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.351e-8■■■■■ 38.3
UPF1Q92900 TMEM248-205ENST00000433271 1610 ntTSL 1 (best)33.21■■■□□ 2.912e-10■■■■■ 38.3
UPF1Q92900 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC19.34■□□□□ 0.692e-10■■■■■ 38.3
UPF1Q92900 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.662e-10■■■■■ 38.3
UPF1Q92900 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.342e-10■■■■■ 38.3
UPF1Q92900 EZR-201ENST00000337147 3068 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -02e-10■■■■■ 38.3
UPF1Q92900 EZR-203ENST00000392177 2933 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.532e-10■■■■■ 38.3
UPF1Q92900 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.44■□□□□ 0.229e-13■■■■■ 38.3
UPF1Q92900 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.25■□□□□ 0.199e-13■■■■■ 38.3
UPF1Q92900 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.119e-13■■■■■ 38.3
UPF1Q92900 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.56■□□□□ 0.089e-13■■■■■ 38.3
UPF1Q92900 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.43■□□□□ 0.069e-13■■■■■ 38.3
UPF1Q92900 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)14.19□□□□□ -0.149e-13■■■■■ 38.3
UPF1Q92900 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC36.26■■■■□ 3.41e-8■■■■■ 38.3
UPF1Q92900 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.311e-8■■■■■ 38.3
UPF1Q92900 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.121e-8■■■■■ 38.3
UPF1Q92900 GIPC1-204ENST00000585606 2071 ntTSL 221.09■□□□□ 0.971e-8■■■■■ 38.3
UPF1Q92900 C19orf48-215ENST00000641539 717 nt18.8■□□□□ 0.61e-20■■■■■ 38.3
UPF1Q92900 C19orf48-209ENST00000597705 892 ntTSL 317.67■□□□□ 0.421e-20■■■■■ 38.3
UPF1Q92900 C19orf48-205ENST00000596287 827 ntTSL 217.18■□□□□ 0.341e-20■■■■■ 38.3
UPF1Q92900 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.245e-9■■■■■ 38.2
UPF1Q92900 CEP68-201ENST00000260569 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.355e-9■■■■■ 38.2
UPF1Q92900 GRAP2-201ENST00000344138 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.44e-7■■■■■ 38.2
UPF1Q92900 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC22.19■■□□□ 1.147e-7■■■■■ 38.2
UPF1Q92900 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.65■□□□□ 0.587e-7■■■■■ 38.2
UPF1Q92900 TOM1-216ENST00000492723 2568 ntTSL 218.37■□□□□ 0.537e-7■■■■■ 38.2
UPF1Q92900 TOM1-205ENST00000424387 2211 ntTSL 517.96■□□□□ 0.477e-7■■■■■ 38.2
UPF1Q92900 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.447e-7■■■■■ 38.2
UPF1Q92900 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.47e-7■■■■■ 38.2
UPF1Q92900 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.44■□□□□ 0.387e-7■■■■■ 38.2
UPF1Q92900 TOM1-203ENST00000404284 2622 ntTSL 215.82■□□□□ 0.127e-7■■■■■ 38.2
UPF1Q92900 MAPK1-203ENST00000491588 491 ntTSL 29.67□□□□□ -0.861e-49■■■■■ 38.2
Retrieved 100 of 15,879 protein–RNA pairs in 605.6 ms