RNA–Protein interactions for RNA: ENST00000521283.1

TRIM35-204, Transcript of tripartite motif containing 35, humanhuman

TSL 2

Gene TRIM35, Length 619 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-204ENST00000521283 AEBP2Q6ZN18 517 aaPredicted RBP29.86■■■□□ 2.37
TRIM35-204ENST00000521283 CHIC1Q5VXU3 224 aa28.5■■■□□ 2.15
TRIM35-204ENST00000521283 SENP3Q9H4L4 574 aaPredicted RBP25.33■■□□□ 1.65
TRIM35-204ENST00000521283 PHF23Q9BUL5 403 aaPredicted RBP25.09■■□□□ 1.61
TRIM35-204ENST00000521283 NISCHQ9Y2I1 1504 aa24.86■■□□□ 1.57
TRIM35-204ENST00000521283 FOXD1Q16676 465 aa23.66■■□□□ 1.38
TRIM35-204ENST00000521283 PLPPR3Q6T4P5 718 aa22.82■■□□□ 1.24
TRIM35-204ENST00000521283 PPP6R1Q9UPN7 881 aa22.32■■□□□ 1.16
TRIM35-204ENST00000521283 CCDC180Q9P1Z9 1646 aa22.24■■□□□ 1.15
TRIM35-204ENST00000521283 ADRA2BP18089 450 aa22.23■■□□□ 1.15
TRIM35-204ENST00000521283 PIAS4Q8N2W9 510 aaPredicted RBP22.1■■□□□ 1.13
TRIM35-204ENST00000521283 MSH5O43196 834 aa21.98■■□□□ 1.11
TRIM35-204ENST00000521283 ABCC9O60706 1549 aa21.72■■□□□ 1.07
TRIM35-204ENST00000521283 POTEDQ86YR6 584 aa21.16■□□□□ 0.98
TRIM35-204ENST00000521283 RB1CC1Q8TDY2 1594 aa20.98■□□□□ 0.95
TRIM35-204ENST00000521283 NACADO15069 1562 aa20.94■□□□□ 0.94
TRIM35-204ENST00000521283 MYO15BQ96JP2 1530 aa20.83■□□□□ 0.92
TRIM35-204ENST00000521283 DCAF8L2P0C7V8 631 aa20.76■□□□□ 0.91
TRIM35-204ENST00000521283 ZCCHC6Q5VYS8 1495 aaKnown RBP20.66■□□□□ 0.9
TRIM35-204ENST00000521283 DCAF1Q9Y4B6 1507 aa20.65■□□□□ 0.9
TRIM35-204ENST00000521283 UNC13AQ9UPW8 1703 aa20.41■□□□□ 0.86
TRIM35-204ENST00000521283 MAPK8IP2Q13387 824 aaPredicted RBP20.38■□□□□ 0.85
TRIM35-204ENST00000521283 PABPN1Q86U42 306 aaKnown RBP eCLIP20.24■□□□□ 0.83
TRIM35-204ENST00000521283 BICRAQ9NZM4 1560 aa20.24■□□□□ 0.83
TRIM35-204ENST00000521283 SCAF1Q9H7N4 1312 aaKnown RBP20.23■□□□□ 0.83
TRIM35-204ENST00000521283 SHROOM4Q9ULL8 1493 aa20.22■□□□□ 0.83
TRIM35-204ENST00000521283 DMRT2Q9Y5R5 561 aa20.16■□□□□ 0.82
TRIM35-204ENST00000521283 SCRIBQ14160 1630 aa20.13■□□□□ 0.81
TRIM35-204ENST00000521283 PPP4R3CPQ6ZMV5 832 aa20.07■□□□□ 0.8
TRIM35-204ENST00000521283 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
TRIM35-204ENST00000521283 EIF4G1Q04637 1599 aaKnown RBP19.76■□□□□ 0.75
TRIM35-204ENST00000521283 CC2D2AQ9P2K1 1620 aa19.69■□□□□ 0.74
TRIM35-204ENST00000521283 CNKSR2Q8WXI2 1034 aa19.62■□□□□ 0.73
TRIM35-204ENST00000521283 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
TRIM35-204ENST00000521283 HOXD11P31277 338 aaPredicted RBP19.51■□□□□ 0.71
TRIM35-204ENST00000521283 RNF216Q9NWF9 866 aaPredicted RBP19.4■□□□□ 0.7
TRIM35-204ENST00000521283 BAZ1AQ9NRL2 1556 aaPredicted RBP19.32■□□□□ 0.68
TRIM35-204ENST00000521283 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
TRIM35-204ENST00000521283 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
TRIM35-204ENST00000521283 SMARCA2P51531 1590 aa19.28■□□□□ 0.68
TRIM35-204ENST00000521283 NCBP3Q53F19 620 aaKnown RBP19.28■□□□□ 0.68
TRIM35-204ENST00000521283 DCAF8L1A6NGE4 600 aa19.26■□□□□ 0.67
TRIM35-204ENST00000521283 ATAD2BQ9ULI0 1458 aa19.22■□□□□ 0.67
TRIM35-204ENST00000521283 HMGXB3Q12766 1538 aa19.2■□□□□ 0.66
TRIM35-204ENST00000521283 PEG3Q9GZU2 1588 aa19.18■□□□□ 0.66
TRIM35-204ENST00000521283 NPM3O75607 178 aaKnown RBP19.1■□□□□ 0.65
TRIM35-204ENST00000521283 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
TRIM35-204ENST00000521283 MROH2BQ7Z745 1585 aa19.08■□□□□ 0.65
TRIM35-204ENST00000521283 KCNA4P22459 653 aa18.92■□□□□ 0.62
TRIM35-204ENST00000521283 WIZO95785 1651 aa18.87■□□□□ 0.61
TRIM35-204ENST00000521283 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
TRIM35-204ENST00000521283 LAMC3Q9Y6N6 1575 aa18.83■□□□□ 0.6
TRIM35-204ENST00000521283 RNF39Q9H2S5 420 aa18.82■□□□□ 0.6
TRIM35-204ENST00000521283 ERCC6Q03468 1493 aa18.82■□□□□ 0.6
TRIM35-204ENST00000521283 CUX2O14529 1486 aa18.73■□□□□ 0.59
TRIM35-204ENST00000521283 CACNB1Q02641 598 aaPredicted RBP18.73■□□□□ 0.59
TRIM35-204ENST00000521283 TOP2AP11388 1531 aaKnown RBP18.73■□□□□ 0.59
TRIM35-204ENST00000521283 NESP48681 1621 aa18.72■□□□□ 0.59
TRIM35-204ENST00000521283 PDS5BQ9NTI5 1447 aa18.72■□□□□ 0.59
TRIM35-204ENST00000521283 CADPSQ9ULU8 1353 aa18.71■□□□□ 0.59
TRIM35-204ENST00000521283 CFTRP13569 1480 aa18.57■□□□□ 0.56
TRIM35-204ENST00000521283 KIF21AQ7Z4S6 1674 aa18.57■□□□□ 0.56
TRIM35-204ENST00000521283 THOC2Q8NI27 1593 aaKnown RBP18.54■□□□□ 0.56
TRIM35-204ENST00000521283 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
TRIM35-204ENST00000521283 C1QBPQ07021 282 aaKnown RBP18.52■□□□□ 0.56
TRIM35-204ENST00000521283 CCDC88BA6NC98 1476 aa18.47■□□□□ 0.55
TRIM35-204ENST00000521283 MRC2Q9UBG0 1479 aa18.47■□□□□ 0.55
TRIM35-204ENST00000521283 CEP164Q9UPV0 1460 aa18.47■□□□□ 0.55
TRIM35-204ENST00000521283 PRDM2Q13029 1718 aa18.46■□□□□ 0.55
TRIM35-204ENST00000521283 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.54
TRIM35-204ENST00000521283 WDR62O43379 1518 aa18.42■□□□□ 0.54
TRIM35-204ENST00000521283 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
TRIM35-204ENST00000521283 DNAJC5Q9H3Z4 198 aa18.27■□□□□ 0.52
TRIM35-204ENST00000521283 U3KPZ7 1027 aaPredicted RBP18.24■□□□□ 0.51
TRIM35-204ENST00000521283 URB2Q14146 1524 aaKnown RBP18.23■□□□□ 0.51
TRIM35-204ENST00000521283 SLC4A2P04920 1241 aa18.22■□□□□ 0.51
TRIM35-204ENST00000521283 SUPT5HO00267 1087 aaKnown RBP18.21■□□□□ 0.51
TRIM35-204ENST00000521283 TOPBP1Q92547 1522 aa18.14■□□□□ 0.49
TRIM35-204ENST00000521283 DNMBPQ6XZF7 1577 aa18.14■□□□□ 0.49
TRIM35-204ENST00000521283 IFT140Q96RY7 1462 aa18.12■□□□□ 0.49
TRIM35-204ENST00000521283 POLA1P09884 1462 aaPredicted RBP17.97■□□□□ 0.47
TRIM35-204ENST00000521283 WDR97A6NE52 1622 aa17.95■□□□□ 0.46
TRIM35-204ENST00000521283 TARBP1Q13395 1621 aaKnown RBP17.95■□□□□ 0.46
TRIM35-204ENST00000521283 SOGA1O94964 1423 aa17.93■□□□□ 0.46
TRIM35-204ENST00000521283 ZNF608Q9ULD9 1512 aaPredicted RBP17.93■□□□□ 0.46
TRIM35-204ENST00000521283 OSCARQ8IYS5 282 aa17.92■□□□□ 0.46
TRIM35-204ENST00000521283 SPINK5Q9NQ38 1064 aaPredicted RBP17.92■□□□□ 0.46
TRIM35-204ENST00000521283 CUX1P39880 1505 aa17.91■□□□□ 0.46
TRIM35-204ENST00000521283 EIF4G3O43432 1585 aaKnown RBP17.91■□□□□ 0.46
TRIM35-204ENST00000521283 FGD5Q6ZNL6 1462 aa17.89■□□□□ 0.45
TRIM35-204ENST00000521283 SLC4A1APQ9BWU0 796 aaKnown RBP17.86■□□□□ 0.45
TRIM35-204ENST00000521283 AQRO60306 1485 aaKnown RBP eCLIP17.83■□□□□ 0.452e-6■■■■■ 30.7
TRIM35-204ENST00000521283 RAD54L2Q9Y4B4 1467 aa17.83■□□□□ 0.45
TRIM35-204ENST00000521283 CAPN15O75808 1086 aa17.81■□□□□ 0.44
TRIM35-204ENST00000521283 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
TRIM35-204ENST00000521283 TOP2BQ02880 1626 aa17.8■□□□□ 0.44
TRIM35-204ENST00000521283 BIVM-ERCC5R4GMW8 1640 aa17.8■□□□□ 0.44
TRIM35-204ENST00000521283 TDRD9Q8NDG6 1382 aaKnown RBP17.79■□□□□ 0.44
TRIM35-204ENST00000521283 ABCA10Q8WWZ4 1543 aa17.77■□□□□ 0.44
TRIM35-204ENST00000521283 GRIN2BQ13224 1484 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms