RNA–Protein interactions for RNA: ENST00000533727.5

AMBRA1-211, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 1 (best) BASIC

Gene AMBRA1, Length 4,817 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-211ENST00000533727 NISCHQ9Y2I1 1504 aa20.46■□□□□ 0.87
AMBRA1-211ENST00000533727 DCAF8L2P0C7V8 631 aa20.25■□□□□ 0.83
AMBRA1-211ENST00000533727 SUPT5HO00267 1087 aaKnown RBP18.69■□□□□ 0.58
AMBRA1-211ENST00000533727 SHROOM4Q9ULL8 1493 aa18.61■□□□□ 0.57
AMBRA1-211ENST00000533727 FAM9AQ8IZU1 332 aaPredicted RBP18.24■□□□□ 0.51
AMBRA1-211ENST00000533727 APLP2Q06481 763 aa17.91■□□□□ 0.46
AMBRA1-211ENST00000533727 ABCC9O60706 1549 aa17.79■□□□□ 0.44
AMBRA1-211ENST00000533727 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
AMBRA1-211ENST00000533727 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
AMBRA1-211ENST00000533727 PELP1Q8IZL8 1130 aaKnown RBP17.51■□□□□ 0.39
AMBRA1-211ENST00000533727 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
AMBRA1-211ENST00000533727 UBTFP17480 764 aaKnown RBP17.33■□□□□ 0.36
AMBRA1-211ENST00000533727 ATP1B4Q9UN42 357 aaPredicted RBP17.3■□□□□ 0.36
AMBRA1-211ENST00000533727 CCDC180Q9P1Z9 1646 aa17.26■□□□□ 0.35
AMBRA1-211ENST00000533727 RANGAP1P46060 587 aaPredicted RBP17.25■□□□□ 0.35
AMBRA1-211ENST00000533727 MYT1Q01538 1121 aa17.14■□□□□ 0.33
AMBRA1-211ENST00000533727 TTBK1Q5TCY1 1321 aaPredicted RBP16.99■□□□□ 0.31
AMBRA1-211ENST00000533727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.97■□□□□ 0.31
AMBRA1-211ENST00000533727 HNRNPUL2Q1KMD3 747 aaKnown RBP16.97■□□□□ 0.31
AMBRA1-211ENST00000533727 RB1CC1Q8TDY2 1594 aa16.96■□□□□ 0.3
AMBRA1-211ENST00000533727 ZCCHC6Q5VYS8 1495 aaKnown RBP16.91■□□□□ 0.3
AMBRA1-211ENST00000533727 MYT1LQ9UL68 1186 aa16.9■□□□□ 0.3
AMBRA1-211ENST00000533727 CENPBP07199 599 aaPredicted RBP16.89■□□□□ 0.29
AMBRA1-211ENST00000533727 SCRIBQ14160 1630 aa16.89■□□□□ 0.29
AMBRA1-211ENST00000533727 PCGF6Q9BYE7 350 aa16.85■□□□□ 0.29
AMBRA1-211ENST00000533727 NACADO15069 1562 aa16.79■□□□□ 0.28
AMBRA1-211ENST00000533727 ERICH6Q7L0X2 663 aa16.76■□□□□ 0.27
AMBRA1-211ENST00000533727 ZEB1P37275 1124 aaPredicted RBP16.75■□□□□ 0.27
AMBRA1-211ENST00000533727 CCER1Q8TC90 406 aaPredicted RBP16.68■□□□□ 0.26
AMBRA1-211ENST00000533727 FBLN2P98095 1184 aa16.67■□□□□ 0.26
AMBRA1-211ENST00000533727 CHIC1Q5VXU3 224 aa16.65■□□□□ 0.26
AMBRA1-211ENST00000533727 ITGAEP38570 1179 aa16.45■□□□□ 0.22
AMBRA1-211ENST00000533727 DCAF1Q9Y4B6 1507 aa16.44■□□□□ 0.22
AMBRA1-211ENST00000533727 NPM1P06748 294 aaKnown RBP eCLIP16.4■□□□□ 0.22
AMBRA1-211ENST00000533727 TRIM26Q12899 539 aaPredicted RBP16.4■□□□□ 0.22
AMBRA1-211ENST00000533727 CDK11AQ9UQ88 783 aaPredicted RBP16.4■□□□□ 0.22
AMBRA1-211ENST00000533727 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
AMBRA1-211ENST00000533727 PPARGC1BQ86YN6 1023 aaKnown RBP16.34■□□□□ 0.21
AMBRA1-211ENST00000533727 NEFLP07196 543 aa16.33■□□□□ 0.2
AMBRA1-211ENST00000533727 LOC105371045A0A1W2PR82 267 aa16.31■□□□□ 0.2
AMBRA1-211ENST00000533727 BAZ1BQ9UIG0 1483 aaKnown RBP16.31■□□□□ 0.2
AMBRA1-211ENST00000533727 FAM50AQ14320 339 aaKnown RBP16.3■□□□□ 0.2
AMBRA1-211ENST00000533727 YTHDC1Q96MU7 727 aaKnown RBP16.28■□□□□ 0.2
AMBRA1-211ENST00000533727 HRCP23327 699 aa16.28■□□□□ 0.2
AMBRA1-211ENST00000533727 CHMP7Q8WUX9 453 aaPredicted RBP16.22■□□□□ 0.19
AMBRA1-211ENST00000533727 ERCC6Q03468 1493 aa16.21■□□□□ 0.18
AMBRA1-211ENST00000533727 BAZ1AQ9NRL2 1556 aaPredicted RBP16.2■□□□□ 0.18
AMBRA1-211ENST00000533727 TRIM52Q96A61 297 aa16.2■□□□□ 0.18
AMBRA1-211ENST00000533727 ESF1Q9H501 851 aaKnown RBP16.18■□□□□ 0.18
AMBRA1-211ENST00000533727 MYO15BQ96JP2 1530 aa16.17■□□□□ 0.18
AMBRA1-211ENST00000533727 P3H3Q8IVL6 736 aa16.13■□□□□ 0.17
AMBRA1-211ENST00000533727 POLR3GLQ9BT43 218 aa16.11■□□□□ 0.17
AMBRA1-211ENST00000533727 RSF1Q96T23 1441 aaPredicted RBP16.1■□□□□ 0.17
AMBRA1-211ENST00000533727 SLC4A1APQ9BWU0 796 aaKnown RBP16.04■□□□□ 0.16
AMBRA1-211ENST00000533727 EEA1Q15075 1411 aa16.03■□□□□ 0.16
AMBRA1-211ENST00000533727 SMARCA2P51531 1590 aa16.02■□□□□ 0.16
AMBRA1-211ENST00000533727 ZNF777Q9ULD5 760 aaPredicted RBP16.02■□□□□ 0.16
AMBRA1-211ENST00000533727 ARID3CA6NKF2 412 aa16.02■□□□□ 0.15
AMBRA1-211ENST00000533727 PDS5BQ9NTI5 1447 aa15.97■□□□□ 0.15
AMBRA1-211ENST00000533727 BCANQ96GW7 911 aa15.97■□□□□ 0.15
AMBRA1-211ENST00000533727 WRNQ14191 1432 aaPredicted RBP eCLIP15.96■□□□□ 0.14
AMBRA1-211ENST00000533727 KIF27Q86VH2 1401 aa15.94■□□□□ 0.14
AMBRA1-211ENST00000533727 STAG3Q9UJ98 1225 aa15.88■□□□□ 0.13
AMBRA1-211ENST00000533727 TSPY4P0CV99 314 aa15.86■□□□□ 0.13
AMBRA1-211ENST00000533727 TSPY10P0CW01 314 aa15.86■□□□□ 0.13
AMBRA1-211ENST00000533727 PLEKHD1A6NEE1 506 aa15.84■□□□□ 0.13
AMBRA1-211ENST00000533727 MTUS2Q5JR59 1369 aa15.84■□□□□ 0.13
AMBRA1-211ENST00000533727 CECR2Q9BXF3 1484 aa15.83■□□□□ 0.13
AMBRA1-211ENST00000533727 DAXXQ9UER7 740 aaPredicted RBP15.83■□□□□ 0.12
AMBRA1-211ENST00000533727 ACIN1Q9UKV3 1341 aaKnown RBP15.83■□□□□ 0.12
AMBRA1-211ENST00000533727 NEUROD1Q13562 356 aa15.81■□□□□ 0.12
AMBRA1-211ENST00000533727 ZNF326Q5BKZ1 582 aaKnown RBP15.8■□□□□ 0.12
AMBRA1-211ENST00000533727 GOLGA3Q08378 1498 aa15.77■□□□□ 0.12
AMBRA1-211ENST00000533727 CLIP1P30622 1438 aa15.75■□□□□ 0.11
AMBRA1-211ENST00000533727 RTL5Q5HYW3 569 aaPredicted RBP15.74■□□□□ 0.11
AMBRA1-211ENST00000533727 CHGAP10645 457 aaKnown RBP15.71■□□□□ 0.11
AMBRA1-211ENST00000533727 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.11
AMBRA1-211ENST00000533727 NEFMP07197 916 aa15.71■□□□□ 0.11
AMBRA1-211ENST00000533727 CADPSQ9ULU8 1353 aa15.69■□□□□ 0.1
AMBRA1-211ENST00000533727 KCNH8Q96L42 1107 aa15.69■□□□□ 0.1
AMBRA1-211ENST00000533727 CNGB1Q14028 1251 aaPredicted RBP15.68■□□□□ 0.1
AMBRA1-211ENST00000533727 DIEXFQ68CQ4 756 aaKnown RBP15.68■□□□□ 0.1
AMBRA1-211ENST00000533727 MROH2BQ7Z745 1585 aa15.68■□□□□ 0.1
AMBRA1-211ENST00000533727 CUX2O14529 1486 aa15.66■□□□□ 0.1
AMBRA1-211ENST00000533727 GTF3C3Q9Y5Q9 886 aa15.65■□□□□ 0.1
AMBRA1-211ENST00000533727 CARMIL2Q6F5E8 1435 aa15.64■□□□□ 0.09
AMBRA1-211ENST00000533727 PLPPR3Q6T4P5 718 aa15.64■□□□□ 0.09
AMBRA1-211ENST00000533727 TOP2AP11388 1531 aaKnown RBP15.63■□□□□ 0.09
AMBRA1-211ENST00000533727 ATAD2BQ9ULI0 1458 aa15.63■□□□□ 0.09
AMBRA1-211ENST00000533727 CARMIL1Q5VZK9 1371 aa15.62■□□□□ 0.09
AMBRA1-211ENST00000533727 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
AMBRA1-211ENST00000533727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.61■□□□□ 0.092e-7■■□□□ 11.4
AMBRA1-211ENST00000533727 SOGA1O94964 1423 aa15.61■□□□□ 0.09
AMBRA1-211ENST00000533727 ABCC8Q09428 1581 aa15.6■□□□□ 0.09
AMBRA1-211ENST00000533727 TONSLQ96HA7 1378 aa15.59■□□□□ 0.09
AMBRA1-211ENST00000533727 ARID4BQ4LE39 1312 aaPredicted RBP15.58■□□□□ 0.08
AMBRA1-211ENST00000533727 FHAD1B1AJZ9 1412 aa15.58■□□□□ 0.08
AMBRA1-211ENST00000533727 CFDP1Q9UEE9 299 aaPredicted RBP15.57■□□□□ 0.08
AMBRA1-211ENST00000533727 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
AMBRA1-211ENST00000533727 ANP32CO43423 234 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms