RNA–Protein interactions for RNA: ENST00000588199.5

AFMID-207, Transcript of arylformamidase, human

TSL 5

Gene AFMID, Length 778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
AFMID-207	ENST00000588199	NISCH	Q9Y2I1	1504 aa		26.55	■■□□□ 1.84
AFMID-207	ENST00000588199	CCDC180	Q9P1Z9	1646 aa		23.42	■■□□□ 1.34
AFMID-207	ENST00000588199	ABCC9	O60706	1549 aa		22.92	■■□□□ 1.26
AFMID-207	ENST00000588199	DCAF8L2	P0C7V8	631 aa		22.26	■■□□□ 1.15
AFMID-207	ENST00000588199	ZCCHC6	Q5VYS8	1495 aa	Known RBP	22.15	■■□□□ 1.14
AFMID-207	ENST00000588199	NACAD	O15069	1562 aa		22	■■□□□ 1.11
AFMID-207	ENST00000588199	RB1CC1	Q8TDY2	1594 aa		21.99	■■□□□ 1.11
AFMID-207	ENST00000588199	MYO15B	Q96JP2	1530 aa		21.88	■■□□□ 1.09
AFMID-207	ENST00000588199	DCAF1	Q9Y4B6	1507 aa		21.88	■■□□□ 1.09
AFMID-207	ENST00000588199	UNC13A	Q9UPW8	1703 aa		21.58	■■□□□ 1.04
AFMID-207	ENST00000588199	SCRIB	Q14160	1630 aa		21.54	■■□□□ 1.04
AFMID-207	ENST00000588199	PABPN1	Q86U42	306 aa	Known RBP eCLIP	21.53	■■□□□ 1.04	2e-6	■□□□□ 10
AFMID-207	ENST00000588199	BICRA	Q9NZM4	1560 aa		21.42	■■□□□ 1.02
AFMID-207	ENST00000588199	SHROOM4	Q9ULL8	1493 aa		21.26	■□□□□ 0.99
AFMID-207	ENST00000588199	DNAJC5B	Q9UF47	199 aa		20.99	■□□□□ 0.95
AFMID-207	ENST00000588199	EIF4G1	Q04637	1599 aa	Known RBP	20.8	■□□□□ 0.92
AFMID-207	ENST00000588199	CECR2	Q9BXF3	1484 aa		20.77	■□□□□ 0.92
AFMID-207	ENST00000588199	CC2D2A	Q9P2K1	1620 aa		20.69	■□□□□ 0.9
AFMID-207	ENST00000588199	SMARCA4	P51532	1647 aa		20.56	■□□□□ 0.88
AFMID-207	ENST00000588199	MROH2B	Q7Z745	1585 aa		20.54	■□□□□ 0.88
AFMID-207	ENST00000588199	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	20.51	■□□□□ 0.87
AFMID-207	ENST00000588199	ATAD2B	Q9ULI0	1458 aa		20.43	■□□□□ 0.86
AFMID-207	ENST00000588199	NCAPD3	P42695	1498 aa		20.35	■□□□□ 0.85
AFMID-207	ENST00000588199	RSF1	Q96T23	1441 aa	Predicted RBP	20.35	■□□□□ 0.85
AFMID-207	ENST00000588199	SMARCA2	P51531	1590 aa		20.33	■□□□□ 0.84
AFMID-207	ENST00000588199	WIZ	O95785	1651 aa		20.32	■□□□□ 0.84
AFMID-207	ENST00000588199	PEG3	Q9GZU2	1588 aa		20.29	■□□□□ 0.84
AFMID-207	ENST00000588199	BAZ1B	Q9UIG0	1483 aa	Known RBP	20.24	■□□□□ 0.83
AFMID-207	ENST00000588199	HMGXB3	Q12766	1538 aa		20.22	■□□□□ 0.83
AFMID-207	ENST00000588199	SUPT5H	O00267	1087 aa	Known RBP	20.08	■□□□□ 0.81
AFMID-207	ENST00000588199	TOP2A	P11388	1531 aa	Known RBP	20.03	■□□□□ 0.8
AFMID-207	ENST00000588199	NES	P48681	1621 aa		19.92	■□□□□ 0.78
AFMID-207	ENST00000588199	CCDC88B	A6NC98	1476 aa		19.87	■□□□□ 0.77
AFMID-207	ENST00000588199	CADPS	Q9ULU8	1353 aa		19.79	■□□□□ 0.76
AFMID-207	ENST00000588199	LAMC3	Q9Y6N6	1575 aa		19.73	■□□□□ 0.75
AFMID-207	ENST00000588199	CFTR	P13569	1480 aa		19.69	■□□□□ 0.74
AFMID-207	ENST00000588199	ERCC6	Q03468	1493 aa		19.67	■□□□□ 0.74
AFMID-207	ENST00000588199	KIF21A	Q7Z4S6	1674 aa		19.62	■□□□□ 0.73
AFMID-207	ENST00000588199	PDS5B	Q9NTI5	1447 aa		19.61	■□□□□ 0.73
AFMID-207	ENST00000588199	FANCD2	Q9BXW9	1451 aa		19.57	■□□□□ 0.72
AFMID-207	ENST00000588199	CEP164	Q9UPV0	1460 aa		19.49	■□□□□ 0.71
AFMID-207	ENST00000588199	PRDM2	Q13029	1718 aa		19.48	■□□□□ 0.71
AFMID-207	ENST00000588199	THOC2	Q8NI27	1593 aa	Known RBP	19.48	■□□□□ 0.71
AFMID-207	ENST00000588199	MRC2	Q9UBG0	1479 aa		19.43	■□□□□ 0.7
AFMID-207	ENST00000588199	URB2	Q14146	1524 aa	Known RBP	19.4	■□□□□ 0.7
AFMID-207	ENST00000588199	WDR62	O43379	1518 aa		19.35	■□□□□ 0.69
AFMID-207	ENST00000588199	CUX2	O14529	1486 aa		19.33	■□□□□ 0.68
AFMID-207	ENST00000588199	TOPBP1	Q92547	1522 aa		19.29	■□□□□ 0.68
AFMID-207	ENST00000588199	CUX1	P39880	1505 aa		19.24	■□□□□ 0.67
AFMID-207	ENST00000588199	ABCC8	Q09428	1581 aa		19.23	■□□□□ 0.67
AFMID-207	ENST00000588199	DNMBP	Q6XZF7	1577 aa		19.23	■□□□□ 0.67
AFMID-207	ENST00000588199	WRN	Q14191	1432 aa	Predicted RBP eCLIP	19.15	■□□□□ 0.66
AFMID-207	ENST00000588199	POLA1	P09884	1462 aa	Predicted RBP	19.14	■□□□□ 0.65
AFMID-207	ENST00000588199	SYNJ1	O43426	1573 aa		19.13	■□□□□ 0.65
AFMID-207	ENST00000588199	FGD5	Q6ZNL6	1462 aa		19.12	■□□□□ 0.65
AFMID-207	ENST00000588199	RAD54L2	Q9Y4B4	1467 aa		19.12	■□□□□ 0.65
AFMID-207	ENST00000588199	ZNF608	Q9ULD9	1512 aa	Predicted RBP	19.08	■□□□□ 0.64
AFMID-207	ENST00000588199	IFT140	Q96RY7	1462 aa		19.07	■□□□□ 0.64
AFMID-207	ENST00000588199	SOGA1	O94964	1423 aa		19.07	■□□□□ 0.64
AFMID-207	ENST00000588199	TOP2B	Q02880	1626 aa		19.05	■□□□□ 0.64
AFMID-207	ENST00000588199	TARBP1	Q13395	1621 aa	Known RBP	19.05	■□□□□ 0.64
AFMID-207	ENST00000588199	BIVM-ERCC5	R4GMW8	1640 aa		19.04	■□□□□ 0.64
AFMID-207	ENST00000588199	TDRD9	Q8NDG6	1382 aa	Known RBP	19	■□□□□ 0.63
AFMID-207	ENST00000588199	AQR	O60306	1485 aa	Known RBP eCLIP	18.99	■□□□□ 0.63	4e-11	■■□□□ 13.2
AFMID-207	ENST00000588199	EIF4G3	O43432	1585 aa	Known RBP	18.93	■□□□□ 0.62
AFMID-207	ENST00000588199	WDR97	A6NE52	1622 aa		18.91	■□□□□ 0.62
AFMID-207	ENST00000588199	ABCA10	Q8WWZ4	1543 aa		18.9	■□□□□ 0.62
AFMID-207	ENST00000588199	TRIM41	Q8WV44	630 aa		18.87	■□□□□ 0.61
AFMID-207	ENST00000588199	GAPVD1	Q14C86	1478 aa		18.83	■□□□□ 0.6
AFMID-207	ENST00000588199	CHIC1	Q5VXU3	224 aa		18.82	■□□□□ 0.6
AFMID-207	ENST00000588199	ABCA5	Q8WWZ7	1642 aa		18.82	■□□□□ 0.6
AFMID-207	ENST00000588199	GRIN2B	Q13224	1484 aa		18.77	■□□□□ 0.6
AFMID-207	ENST00000588199	SNAPC4	Q5SXM2	1469 aa		18.77	■□□□□ 0.6
AFMID-207	ENST00000588199	PBRM1	Q86U86	1689 aa		18.76	■□□□□ 0.59
AFMID-207	ENST00000588199	RUSC2	Q8N2Y8	1516 aa		18.75	■□□□□ 0.59
AFMID-207	ENST00000588199	FBLN2	P98095	1184 aa		18.74	■□□□□ 0.59
AFMID-207	ENST00000588199	KIF27	Q86VH2	1401 aa		18.7	■□□□□ 0.58
AFMID-207	ENST00000588199	IGF1R	P08069	1367 aa		18.68	■□□□□ 0.58
AFMID-207	ENST00000588199	MAGI1	Q96QZ7	1491 aa	Predicted RBP	18.67	■□□□□ 0.58
AFMID-207	ENST00000588199	CHD1	O14646	1710 aa		18.67	■□□□□ 0.58
AFMID-207	ENST00000588199	OSCAR	Q8IYS5	282 aa		18.65	■□□□□ 0.58
AFMID-207	ENST00000588199	CHMP7	Q8WUX9	453 aa	Predicted RBP	18.65	■□□□□ 0.58
AFMID-207	ENST00000588199	ERICH3	Q5RHP9	1530 aa		18.64	■□□□□ 0.58
AFMID-207	ENST00000588199	DNAJC5	Q9H3Z4	198 aa		18.63	■□□□□ 0.57
AFMID-207	ENST00000588199	SYNJ2	O15056	1496 aa		18.63	■□□□□ 0.57
AFMID-207	ENST00000588199	ADAMTS12	P58397	1594 aa		18.62	■□□□□ 0.57
AFMID-207	ENST00000588199	FHAD1	B1AJZ9	1412 aa		18.59	■□□□□ 0.57
AFMID-207	ENST00000588199	FAM9A	Q8IZU1	332 aa	Predicted RBP	18.59	■□□□□ 0.57
AFMID-207	ENST00000588199	GRIN2A	Q12879	1464 aa		18.55	■□□□□ 0.56
AFMID-207	ENST00000588199	CARMIL1	Q5VZK9	1371 aa		18.55	■□□□□ 0.56
AFMID-207	ENST00000588199	CEP170	Q5SW79	1584 aa		18.49	■□□□□ 0.55
AFMID-207	ENST00000588199	CUL7	Q14999	1698 aa		18.49	■□□□□ 0.55
AFMID-207	ENST00000588199	CSRNP3	Q8WYN3	585 aa		18.48	■□□□□ 0.55
AFMID-207	ENST00000588199	NUP160	Q12769	1436 aa		18.46	■□□□□ 0.55
AFMID-207	ENST00000588199	CLASP1	Q7Z460	1538 aa		18.45	■□□□□ 0.54
AFMID-207	ENST00000588199	PRX	Q9BXM0	1461 aa		18.42	■□□□□ 0.54
AFMID-207	ENST00000588199	RAPGEF2	Q9Y4G8	1499 aa		18.42	■□□□□ 0.54
AFMID-207	ENST00000588199	EHMT2	Q96KQ7	1210 aa		18.41	■□□□□ 0.54
AFMID-207	ENST00000588199	EEA1	Q15075	1411 aa		18.4	■□□□□ 0.54
AFMID-207	ENST00000588199	ARHGEF11	O15085	1522 aa		18.33	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms