RNA–Protein interactions for RNA: ENST00000305364.8

TRIM35-201, Transcript of tripartite motif containing 35, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM35, Length 4,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-201ENST00000305364 NISCHQ9Y2I1 1504 aa23.65■■□□□ 1.38
TRIM35-201ENST00000305364 SUPT5HO00267 1087 aaKnown RBP21.92■■□□□ 1.1
TRIM35-201ENST00000305364 SHROOM4Q9ULL8 1493 aa21.82■■□□□ 1.08
TRIM35-201ENST00000305364 DCAF8L2P0C7V8 631 aa21.53■■□□□ 1.04
TRIM35-201ENST00000305364 PCGF6Q9BYE7 350 aa21.48■■□□□ 1.03
TRIM35-201ENST00000305364 HRCP23327 699 aa21.42■■□□□ 1.02
TRIM35-201ENST00000305364 PPARGC1BQ86YN6 1023 aaKnown RBP21.12■□□□□ 0.97
TRIM35-201ENST00000305364 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
TRIM35-201ENST00000305364 PELP1Q8IZL8 1130 aaKnown RBP20.84■□□□□ 0.93
TRIM35-201ENST00000305364 LOC105371045A0A1W2PR82 267 aa20.65■□□□□ 0.9
TRIM35-201ENST00000305364 TRIM26Q12899 539 aaPredicted RBP20.6■□□□□ 0.89
TRIM35-201ENST00000305364 EHMT2Q96KQ7 1210 aa20.58■□□□□ 0.89
TRIM35-201ENST00000305364 ZEB1P37275 1124 aaPredicted RBP20.56■□□□□ 0.88
TRIM35-201ENST00000305364 MYO15BQ96JP2 1530 aa20.49■□□□□ 0.87
TRIM35-201ENST00000305364 FAM9AQ8IZU1 332 aaPredicted RBP20.42■□□□□ 0.86
TRIM35-201ENST00000305364 TRIM41Q8WV44 630 aa20.19■□□□□ 0.82
TRIM35-201ENST00000305364 DCAF1Q9Y4B6 1507 aa20.18■□□□□ 0.82
TRIM35-201ENST00000305364 CENPBP07199 599 aaPredicted RBP20.16■□□□□ 0.82
TRIM35-201ENST00000305364 CCER1Q8TC90 406 aaPredicted RBP20.13■□□□□ 0.81
TRIM35-201ENST00000305364 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
TRIM35-201ENST00000305364 MYT1Q01538 1121 aa20.1■□□□□ 0.81
TRIM35-201ENST00000305364 TTBK1Q5TCY1 1321 aaPredicted RBP20.03■□□□□ 0.8
TRIM35-201ENST00000305364 ZCCHC6Q5VYS8 1495 aaKnown RBP19.96■□□□□ 0.79
TRIM35-201ENST00000305364 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.91■□□□□ 0.78
TRIM35-201ENST00000305364 GTF3C3Q9Y5Q9 886 aa19.9■□□□□ 0.78
TRIM35-201ENST00000305364 YTHDC1Q96MU7 727 aaKnown RBP19.89■□□□□ 0.77
TRIM35-201ENST00000305364 ACIN1Q9UKV3 1341 aaKnown RBP19.89■□□□□ 0.77
TRIM35-201ENST00000305364 DIEXFQ68CQ4 756 aaKnown RBP19.83■□□□□ 0.76
TRIM35-201ENST00000305364 NEUROD1Q13562 356 aa19.78■□□□□ 0.76
TRIM35-201ENST00000305364 CCDC180Q9P1Z9 1646 aa19.77■□□□□ 0.76
TRIM35-201ENST00000305364 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
TRIM35-201ENST00000305364 ZNF316A6NFI3 1004 aaPredicted RBP19.37■□□□□ 0.69
TRIM35-201ENST00000305364 APLP2Q06481 763 aa19.36■□□□□ 0.69
TRIM35-201ENST00000305364 HNRNPUL2Q1KMD3 747 aaKnown RBP19.32■□□□□ 0.68
TRIM35-201ENST00000305364 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
TRIM35-201ENST00000305364 MIER1Q8N108 512 aa19.15■□□□□ 0.66
TRIM35-201ENST00000305364 RSF1Q96T23 1441 aaPredicted RBP19.13■□□□□ 0.65
TRIM35-201ENST00000305364 SCRIBQ14160 1630 aa18.99■□□□□ 0.63
TRIM35-201ENST00000305364 ABCC9O60706 1549 aa18.97■□□□□ 0.63
TRIM35-201ENST00000305364 BCANQ96GW7 911 aa18.94■□□□□ 0.62
TRIM35-201ENST00000305364 NEFLP07196 543 aa18.93■□□□□ 0.62
TRIM35-201ENST00000305364 RB1CC1Q8TDY2 1594 aa18.91■□□□□ 0.62
TRIM35-201ENST00000305364 ERICH6Q7L0X2 663 aa18.88■□□□□ 0.61
TRIM35-201ENST00000305364 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
TRIM35-201ENST00000305364 ITGAEP38570 1179 aa18.81■□□□□ 0.6
TRIM35-201ENST00000305364 CEP162Q5TB80 1403 aa18.81■□□□□ 0.6
TRIM35-201ENST00000305364 CLSPNQ9HAW4 1339 aa18.78■□□□□ 0.6
TRIM35-201ENST00000305364 SUPT16HQ9Y5B9 1047 aaKnown RBP18.75■□□□□ 0.59
TRIM35-201ENST00000305364 PABPN1Q86U42 306 aaKnown RBP eCLIP18.74■□□□□ 0.59
TRIM35-201ENST00000305364 ANP32EQ9BTT0 268 aa18.72■□□□□ 0.59
TRIM35-201ENST00000305364 FKBP8Q14318 412 aa18.65■□□□□ 0.58
TRIM35-201ENST00000305364 CECR2Q9BXF3 1484 aa18.64■□□□□ 0.57
TRIM35-201ENST00000305364 TNIKQ9UKE5 1360 aa18.62■□□□□ 0.57
TRIM35-201ENST00000305364 BCL11AQ9H165 835 aa18.58■□□□□ 0.56
TRIM35-201ENST00000305364 TSHZ2Q9NRE2 1034 aa18.57■□□□□ 0.56
TRIM35-201ENST00000305364 SOGA1O94964 1423 aa18.53■□□□□ 0.56
TRIM35-201ENST00000305364 WRNQ14191 1432 aaPredicted RBP eCLIP18.52■□□□□ 0.56
TRIM35-201ENST00000305364 ATP1B4Q9UN42 357 aaPredicted RBP18.52■□□□□ 0.56
TRIM35-201ENST00000305364 MROH2BQ7Z745 1585 aa18.51■□□□□ 0.55
TRIM35-201ENST00000305364 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
TRIM35-201ENST00000305364 DDX10Q13206 875 aaKnown RBP18.47■□□□□ 0.55
TRIM35-201ENST00000305364 CLIP1P30622 1438 aa18.47■□□□□ 0.55
TRIM35-201ENST00000305364 GOLGA3Q08378 1498 aa18.46■□□□□ 0.55
TRIM35-201ENST00000305364 ABCC8Q09428 1581 aa18.46■□□□□ 0.55
TRIM35-201ENST00000305364 TRIM52Q96A61 297 aa18.43■□□□□ 0.54
TRIM35-201ENST00000305364 EEA1Q15075 1411 aa18.43■□□□□ 0.54
TRIM35-201ENST00000305364 ANP32CO43423 234 aa18.41■□□□□ 0.54
TRIM35-201ENST00000305364 WIZO95785 1651 aa18.38■□□□□ 0.53
TRIM35-201ENST00000305364 CDK11AQ9UQ88 783 aaPredicted RBP18.38■□□□□ 0.53
TRIM35-201ENST00000305364 FAM50AQ14320 339 aaKnown RBP18.33■□□□□ 0.53
TRIM35-201ENST00000305364 RBM19Q9Y4C8 960 aaKnown RBP18.31■□□□□ 0.52
TRIM35-201ENST00000305364 KCNH8Q96L42 1107 aa18.31■□□□□ 0.52
TRIM35-201ENST00000305364 HIRIP3Q9BW71 556 aaPredicted RBP18.31■□□□□ 0.52
TRIM35-201ENST00000305364 RUSC2Q8N2Y8 1516 aa18.28■□□□□ 0.52
TRIM35-201ENST00000305364 CEP164Q9UPV0 1460 aa18.25■□□□□ 0.51
TRIM35-201ENST00000305364 IRX6P78412 446 aaPredicted RBP18.24■□□□□ 0.51
TRIM35-201ENST00000305364 VPS8Q8N3P4 1428 aa18.23■□□□□ 0.51
TRIM35-201ENST00000305364 HNRNPUQ00839 825 aaKnown RBP eCLIP18.2■□□□□ 0.5
TRIM35-201ENST00000305364 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
TRIM35-201ENST00000305364 DHX57Q6P158 1386 aaKnown RBP18.18■□□□□ 0.5
TRIM35-201ENST00000305364 CNGB1Q14028 1251 aaPredicted RBP18.16■□□□□ 0.5
TRIM35-201ENST00000305364 RTL5Q5HYW3 569 aaPredicted RBP18.13■□□□□ 0.49
TRIM35-201ENST00000305364 KANK4Q5T7N3 995 aaPredicted RBP18.13■□□□□ 0.49
TRIM35-201ENST00000305364 NACADO15069 1562 aa18.12■□□□□ 0.49
TRIM35-201ENST00000305364 SIN3AQ96ST3 1273 aa18.12■□□□□ 0.49
TRIM35-201ENST00000305364 NBR1Q14596 966 aa18.07■□□□□ 0.48
TRIM35-201ENST00000305364 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
TRIM35-201ENST00000305364 POLR3GLQ9BT43 218 aa18.03■□□□□ 0.48
TRIM35-201ENST00000305364 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
TRIM35-201ENST00000305364 CCNB3Q8WWL7 1395 aa18.02■□□□□ 0.47
TRIM35-201ENST00000305364 MYT1LQ9UL68 1186 aa18.01■□□□□ 0.47
TRIM35-201ENST00000305364 TONSLQ96HA7 1378 aa18.01■□□□□ 0.47
TRIM35-201ENST00000305364 RAPGEF2Q9Y4G8 1499 aa17.98■□□□□ 0.47
TRIM35-201ENST00000305364 FAM9BQ8IZU0 186 aa17.97■□□□□ 0.47
TRIM35-201ENST00000305364 CCER2I3L3R5 266 aa17.96■□□□□ 0.46
TRIM35-201ENST00000305364 RAB3GAP2Q9H2M9 1393 aa17.94■□□□□ 0.46
TRIM35-201ENST00000305364 ANP32AP39687 249 aaKnown RBP17.93■□□□□ 0.46
TRIM35-201ENST00000305364 DEKP35659 375 aaKnown RBP17.92■□□□□ 0.46
TRIM35-201ENST00000305364 SMARCA2P51531 1590 aa17.9■□□□□ 0.46
TRIM35-201ENST00000305364 B4GALNT3Q6L9W6 998 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms