RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 DCAF8L2P0C7V8 631 aa23.71■■□□□ 1.39
VCP-201ENST00000358901 NISCHQ9Y2I1 1504 aa23.23■■□□□ 1.31
VCP-201ENST00000358901 SUPT5HO00267 1087 aaKnown RBP22.99■■□□□ 1.27
VCP-201ENST00000358901 SHROOM4Q9ULL8 1493 aa22.59■■□□□ 1.21
VCP-201ENST00000358901 EHMT2Q96KQ7 1210 aa22.09■■□□□ 1.13
VCP-201ENST00000358901 PCGF6Q9BYE7 350 aa21.73■■□□□ 1.07
VCP-201ENST00000358901 FAM9AQ8IZU1 332 aaPredicted RBP21.63■■□□□ 1.05
VCP-201ENST00000358901 TTBK1Q5TCY1 1321 aaPredicted RBP21.37■■□□□ 1.01
VCP-201ENST00000358901 APLP2Q06481 763 aa21.36■■□□□ 1.01
VCP-201ENST00000358901 PELP1Q8IZL8 1130 aaKnown RBP21.27■■□□□ 1
VCP-201ENST00000358901 TRIM41Q8WV44 630 aa21.2■□□□□ 0.99
VCP-201ENST00000358901 ZEB1P37275 1124 aaPredicted RBP21.1■□□□□ 0.97
VCP-201ENST00000358901 CCER1Q8TC90 406 aaPredicted RBP21.06■□□□□ 0.96
VCP-201ENST00000358901 RANGAP1P46060 587 aaPredicted RBP20.99■□□□□ 0.95
VCP-201ENST00000358901 CENPBP07199 599 aaPredicted RBP20.98■□□□□ 0.95
VCP-201ENST00000358901 UBTFP17480 764 aaKnown RBP20.83■□□□□ 0.92
VCP-201ENST00000358901 PPARGC1BQ86YN6 1023 aaKnown RBP20.82■□□□□ 0.92
VCP-201ENST00000358901 HRCP23327 699 aa20.8■□□□□ 0.92
VCP-201ENST00000358901 TRIM26Q12899 539 aaPredicted RBP20.74■□□□□ 0.91
VCP-201ENST00000358901 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
VCP-201ENST00000358901 LOC105371045A0A1W2PR82 267 aa20.72■□□□□ 0.91
VCP-201ENST00000358901 YTHDC1Q96MU7 727 aaKnown RBP20.64■□□□□ 0.9
VCP-201ENST00000358901 ATP1B4Q9UN42 357 aaPredicted RBP20.62■□□□□ 0.89
VCP-201ENST00000358901 ERICH6Q7L0X2 663 aa20.42■□□□□ 0.86
VCP-201ENST00000358901 NEFLP07196 543 aa20.33■□□□□ 0.85
VCP-201ENST00000358901 HNRNPUL2Q1KMD3 747 aaKnown RBP20.24■□□□□ 0.83
VCP-201ENST00000358901 ITGAEP38570 1179 aa20.21■□□□□ 0.83
VCP-201ENST00000358901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.19■□□□□ 0.82
VCP-201ENST00000358901 MYT1Q01538 1121 aa20.13■□□□□ 0.81
VCP-201ENST00000358901 DIEXFQ68CQ4 756 aaKnown RBP20.03■□□□□ 0.8
VCP-201ENST00000358901 POLR3GLQ9BT43 218 aa19.85■□□□□ 0.77
VCP-201ENST00000358901 CNGB1Q14028 1251 aaPredicted RBP19.79■□□□□ 0.76
VCP-201ENST00000358901 GTF3C3Q9Y5Q9 886 aa19.73■□□□□ 0.75
VCP-201ENST00000358901 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.741e-12■■□□□ 14.2
VCP-201ENST00000358901 ABCC9O60706 1549 aa19.64■□□□□ 0.73
VCP-201ENST00000358901 FAM50AQ14320 339 aaKnown RBP19.64■□□□□ 0.73
VCP-201ENST00000358901 NEUROD1Q13562 356 aa19.57■□□□□ 0.72
VCP-201ENST00000358901 ZNF316A6NFI3 1004 aaPredicted RBP19.56■□□□□ 0.72
VCP-201ENST00000358901 DAXXQ9UER7 740 aaPredicted RBP19.54■□□□□ 0.72
VCP-201ENST00000358901 MYT1LQ9UL68 1186 aa19.51■□□□□ 0.71
VCP-201ENST00000358901 BCANQ96GW7 911 aa19.51■□□□□ 0.71
VCP-201ENST00000358901 ACIN1Q9UKV3 1341 aaKnown RBP19.49■□□□□ 0.71
VCP-201ENST00000358901 CSRNP3Q8WYN3 585 aa19.47■□□□□ 0.71
VCP-201ENST00000358901 TRIM52Q96A61 297 aa19.44■□□□□ 0.7
VCP-201ENST00000358901 ANP32CO43423 234 aa19.36■□□□□ 0.69
VCP-201ENST00000358901 DCAF1Q9Y4B6 1507 aa19.34■□□□□ 0.69
VCP-201ENST00000358901 RTL5Q5HYW3 569 aaPredicted RBP19.28■□□□□ 0.68
VCP-201ENST00000358901 ZCCHC6Q5VYS8 1495 aaKnown RBP19.28■□□□□ 0.68
VCP-201ENST00000358901 P3H3Q8IVL6 736 aa19.25■□□□□ 0.67
VCP-201ENST00000358901 ZNF326Q5BKZ1 582 aaKnown RBP19.25■□□□□ 0.67
VCP-201ENST00000358901 SLC4A1APQ9BWU0 796 aaKnown RBP19.24■□□□□ 0.67
VCP-201ENST00000358901 CLSPNQ9HAW4 1339 aa19.22■□□□□ 0.67
VCP-201ENST00000358901 CDK11AQ9UQ88 783 aaPredicted RBP19.18■□□□□ 0.66
VCP-201ENST00000358901 MYO15BQ96JP2 1530 aa19.12■□□□□ 0.65
VCP-201ENST00000358901 ARID3CA6NKF2 412 aa19.09■□□□□ 0.65
VCP-201ENST00000358901 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
VCP-201ENST00000358901 SCAF1Q9H7N4 1312 aaKnown RBP19.06■□□□□ 0.64
VCP-201ENST00000358901 DDX10Q13206 875 aaKnown RBP19.02■□□□□ 0.63
VCP-201ENST00000358901 FBLN2P98095 1184 aa19.01■□□□□ 0.63
VCP-201ENST00000358901 FKBP8Q14318 412 aa19.01■□□□□ 0.63
VCP-201ENST00000358901 MIER1Q8N108 512 aa18.95■□□□□ 0.62
VCP-201ENST00000358901 TONSLQ96HA7 1378 aa18.92■□□□□ 0.62
VCP-201ENST00000358901 HNRNPUQ00839 825 aaKnown RBP eCLIP18.91■□□□□ 0.62
VCP-201ENST00000358901 ZNF777Q9ULD5 760 aaPredicted RBP18.89■□□□□ 0.61
VCP-201ENST00000358901 ANP32AP39687 249 aaKnown RBP18.82■□□□□ 0.6
VCP-201ENST00000358901 FAM9BQ8IZU0 186 aa18.82■□□□□ 0.6
VCP-201ENST00000358901 RSF1Q96T23 1441 aaPredicted RBP18.81■□□□□ 0.6
VCP-201ENST00000358901 NPM2Q86SE8 214 aaKnown RBP18.78■□□□□ 0.6
VCP-201ENST00000358901 HIRIP3Q9BW71 556 aaPredicted RBP18.78■□□□□ 0.6
VCP-201ENST00000358901 CLIP1P30622 1438 aa18.78■□□□□ 0.6
VCP-201ENST00000358901 CANXP27824 592 aaKnown RBP18.77■□□□□ 0.6
VCP-201ENST00000358901 CHIC2Q9UKJ5 165 aa18.77■□□□□ 0.6
VCP-201ENST00000358901 CEP162Q5TB80 1403 aa18.72■□□□□ 0.59
VCP-201ENST00000358901 BCL11AQ9H165 835 aa18.72■□□□□ 0.59
VCP-201ENST00000358901 SALL2Q9Y467 1007 aaPredicted RBP18.7■□□□□ 0.58
VCP-201ENST00000358901 CCDC180Q9P1Z9 1646 aa18.69■□□□□ 0.58
VCP-201ENST00000358901 ZBTB47Q9UFB7 747 aaPredicted RBP18.67■□□□□ 0.58
VCP-201ENST00000358901 IRX6P78412 446 aaPredicted RBP18.65■□□□□ 0.58
VCP-201ENST00000358901 MRS2Q9HD23 443 aa18.64■□□□□ 0.57
VCP-201ENST00000358901 TMC1Q8TDI8 760 aa18.62■□□□□ 0.57
VCP-201ENST00000358901 CCDC136Q96JN2 1154 aa18.61■□□□□ 0.57
VCP-201ENST00000358901 MTUS2Q5JR59 1369 aa18.6■□□□□ 0.57
VCP-201ENST00000358901 EEA1Q15075 1411 aa18.59■□□□□ 0.57
VCP-201ENST00000358901 GOLGA3Q08378 1498 aa18.58■□□□□ 0.57
VCP-201ENST00000358901 NEFMP07197 916 aa18.56■□□□□ 0.56
VCP-201ENST00000358901 TNIKQ9UKE5 1360 aa18.55■□□□□ 0.56
VCP-201ENST00000358901 RRP7BPQ9NSQ0 103 aa18.53■□□□□ 0.56
VCP-201ENST00000358901 KDM2AQ9Y2K7 1162 aa18.52■□□□□ 0.56
VCP-201ENST00000358901 EIF4G2P78344 907 aaKnown RBP eCLIP18.52■□□□□ 0.55
VCP-201ENST00000358901 WRNQ14191 1432 aaPredicted RBP eCLIP18.51■□□□□ 0.55
VCP-201ENST00000358901 NBR1Q14596 966 aa18.51■□□□□ 0.55
VCP-201ENST00000358901 SLC24A1O60721 1099 aa18.5■□□□□ 0.55
VCP-201ENST00000358901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.556e-7■■■■□ 20.2
VCP-201ENST00000358901 CHGAP10645 457 aaKnown RBP18.49■□□□□ 0.55
VCP-201ENST00000358901 TSPY4P0CV99 314 aa18.46■□□□□ 0.55
VCP-201ENST00000358901 TSPY10P0CW01 314 aa18.46■□□□□ 0.55
VCP-201ENST00000358901 SIN3AQ96ST3 1273 aa18.42■□□□□ 0.54
VCP-201ENST00000358901 SENP3-EIF4A1A0A087X0R7 540 aa18.4■□□□□ 0.54
VCP-201ENST00000358901 EIF5BO60841 1220 aaKnown RBP18.4■□□□□ 0.54
VCP-201ENST00000358901 CEP164Q9UPV0 1460 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms