RNA–Protein interactions for RNA: ENST00000534300.5

AMBRA1-212, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 1 (best) BASIC

Gene AMBRA1, Length 5,067 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-212ENST00000534300 NISCHQ9Y2I1 1504 aa21.41■■□□□ 1.02
AMBRA1-212ENST00000534300 DCAF8L2P0C7V8 631 aa21.18■□□□□ 0.98
AMBRA1-212ENST00000534300 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
AMBRA1-212ENST00000534300 SHROOM4Q9ULL8 1493 aa19.27■□□□□ 0.68
AMBRA1-212ENST00000534300 SUPT5HO00267 1087 aaKnown RBP19.25■□□□□ 0.67
AMBRA1-212ENST00000534300 MYT1Q01538 1121 aa19.06■□□□□ 0.64
AMBRA1-212ENST00000534300 ABCC9O60706 1549 aa18.93■□□□□ 0.62
AMBRA1-212ENST00000534300 FAM9AQ8IZU1 332 aaPredicted RBP18.83■□□□□ 0.6
AMBRA1-212ENST00000534300 CENPBP07199 599 aaPredicted RBP18.79■□□□□ 0.6
AMBRA1-212ENST00000534300 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
AMBRA1-212ENST00000534300 ERICH6Q7L0X2 663 aa18.66■□□□□ 0.58
AMBRA1-212ENST00000534300 CCER1Q8TC90 406 aaPredicted RBP18.63■□□□□ 0.57
AMBRA1-212ENST00000534300 ZEB1P37275 1124 aaPredicted RBP18.63■□□□□ 0.57
AMBRA1-212ENST00000534300 EHMT2Q96KQ7 1210 aa18.55■□□□□ 0.56
AMBRA1-212ENST00000534300 APLP2Q06481 763 aa18.51■□□□□ 0.55
AMBRA1-212ENST00000534300 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.54
AMBRA1-212ENST00000534300 NEFLP07196 543 aa18.2■□□□□ 0.5
AMBRA1-212ENST00000534300 CCDC180Q9P1Z9 1646 aa18.14■□□□□ 0.5
AMBRA1-212ENST00000534300 TTBK1Q5TCY1 1321 aaPredicted RBP18.07■□□□□ 0.48
AMBRA1-212ENST00000534300 TRIM41Q8WV44 630 aa18.05■□□□□ 0.48
AMBRA1-212ENST00000534300 YTHDC1Q96MU7 727 aaKnown RBP18.03■□□□□ 0.48
AMBRA1-212ENST00000534300 HRCP23327 699 aa18■□□□□ 0.47
AMBRA1-212ENST00000534300 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
AMBRA1-212ENST00000534300 ATP1B4Q9UN42 357 aaPredicted RBP17.89■□□□□ 0.45
AMBRA1-212ENST00000534300 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
AMBRA1-212ENST00000534300 TRIM26Q12899 539 aaPredicted RBP17.82■□□□□ 0.44
AMBRA1-212ENST00000534300 UBTFP17480 764 aaKnown RBP17.82■□□□□ 0.44
AMBRA1-212ENST00000534300 SCRIBQ14160 1630 aa17.74■□□□□ 0.43
AMBRA1-212ENST00000534300 NACADO15069 1562 aa17.69■□□□□ 0.42
AMBRA1-212ENST00000534300 DAXXQ9UER7 740 aaPredicted RBP17.68■□□□□ 0.42
AMBRA1-212ENST00000534300 ZCCHC6Q5VYS8 1495 aaKnown RBP17.65■□□□□ 0.42
AMBRA1-212ENST00000534300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.63■□□□□ 0.41
AMBRA1-212ENST00000534300 HNRNPUL2Q1KMD3 747 aaKnown RBP17.63■□□□□ 0.41
AMBRA1-212ENST00000534300 MYT1LQ9UL68 1186 aa17.56■□□□□ 0.4
AMBRA1-212ENST00000534300 FBLN2P98095 1184 aa17.53■□□□□ 0.4
AMBRA1-212ENST00000534300 RTL5Q5HYW3 569 aaPredicted RBP17.52■□□□□ 0.4
AMBRA1-212ENST00000534300 PPARGC1BQ86YN6 1023 aaKnown RBP17.44■□□□□ 0.38
AMBRA1-212ENST00000534300 DIEXFQ68CQ4 756 aaKnown RBP17.4■□□□□ 0.38
AMBRA1-212ENST00000534300 GTF3C3Q9Y5Q9 886 aa17.3■□□□□ 0.36
AMBRA1-212ENST00000534300 ZNF316A6NFI3 1004 aaPredicted RBP17.24■□□□□ 0.35
AMBRA1-212ENST00000534300 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
AMBRA1-212ENST00000534300 LOC105371045A0A1W2PR82 267 aa17.2■□□□□ 0.34
AMBRA1-212ENST00000534300 NPM1P06748 294 aaKnown RBP eCLIP17.2■□□□□ 0.34
AMBRA1-212ENST00000534300 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
AMBRA1-212ENST00000534300 ERCC6Q03468 1493 aa17.16■□□□□ 0.34
AMBRA1-212ENST00000534300 POLR3GLQ9BT43 218 aa17.12■□□□□ 0.33
AMBRA1-212ENST00000534300 BAZ1BQ9UIG0 1483 aaKnown RBP17.11■□□□□ 0.33
AMBRA1-212ENST00000534300 ITGAEP38570 1179 aa17.1■□□□□ 0.33
AMBRA1-212ENST00000534300 CLSPNQ9HAW4 1339 aa17.08■□□□□ 0.33
AMBRA1-212ENST00000534300 CDK11AQ9UQ88 783 aaPredicted RBP17.08■□□□□ 0.33
AMBRA1-212ENST00000534300 ACIN1Q9UKV3 1341 aaKnown RBP17.08■□□□□ 0.32
AMBRA1-212ENST00000534300 CHMP7Q8WUX9 453 aaPredicted RBP17.04■□□□□ 0.32
AMBRA1-212ENST00000534300 BCANQ96GW7 911 aa17.02■□□□□ 0.31
AMBRA1-212ENST00000534300 MYO15BQ96JP2 1530 aa17■□□□□ 0.31
AMBRA1-212ENST00000534300 CNGB1Q14028 1251 aaPredicted RBP16.94■□□□□ 0.3
AMBRA1-212ENST00000534300 BAZ1AQ9NRL2 1556 aaPredicted RBP16.94■□□□□ 0.3
AMBRA1-212ENST00000534300 CSRNP3Q8WYN3 585 aa16.88■□□□□ 0.29
AMBRA1-212ENST00000534300 ESF1Q9H501 851 aaKnown RBP16.87■□□□□ 0.29
AMBRA1-212ENST00000534300 ANP32CO43423 234 aa16.86■□□□□ 0.29
AMBRA1-212ENST00000534300 CECR2Q9BXF3 1484 aa16.85■□□□□ 0.29
AMBRA1-212ENST00000534300 PDS5BQ9NTI5 1447 aa16.83■□□□□ 0.28
AMBRA1-212ENST00000534300 ANP32AP39687 249 aaKnown RBP16.83■□□□□ 0.28
AMBRA1-212ENST00000534300 EIF5BO60841 1220 aaKnown RBP16.82■□□□□ 0.28
AMBRA1-212ENST00000534300 SMARCA2P51531 1590 aa16.81■□□□□ 0.28
AMBRA1-212ENST00000534300 GLIPR1L2Q4G1C9 344 aa16.79■□□□□ 0.28
AMBRA1-212ENST00000534300 P3H3Q8IVL6 736 aa16.78■□□□□ 0.28
AMBRA1-212ENST00000534300 RSF1Q96T23 1441 aaPredicted RBP16.77■□□□□ 0.27
AMBRA1-212ENST00000534300 FAM50AQ14320 339 aaKnown RBP16.74■□□□□ 0.27
AMBRA1-212ENST00000534300 ARID3CA6NKF2 412 aa16.72■□□□□ 0.27
AMBRA1-212ENST00000534300 NEUROD1Q13562 356 aa16.65■□□□□ 0.26
AMBRA1-212ENST00000534300 ZNF777Q9ULD5 760 aaPredicted RBP16.63■□□□□ 0.25
AMBRA1-212ENST00000534300 TRIM52Q96A61 297 aa16.63■□□□□ 0.25
AMBRA1-212ENST00000534300 SLC4A1APQ9BWU0 796 aaKnown RBP16.62■□□□□ 0.25
AMBRA1-212ENST00000534300 ZBTB47Q9UFB7 747 aaPredicted RBP16.6■□□□□ 0.25
AMBRA1-212ENST00000534300 FKBP8Q14318 412 aa16.59■□□□□ 0.25
AMBRA1-212ENST00000534300 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
AMBRA1-212ENST00000534300 WRNQ14191 1432 aaPredicted RBP eCLIP16.57■□□□□ 0.24
AMBRA1-212ENST00000534300 ANP32BQ92688 251 aaKnown RBP16.57■□□□□ 0.24
AMBRA1-212ENST00000534300 KIF27Q86VH2 1401 aa16.55■□□□□ 0.24
AMBRA1-212ENST00000534300 NPM2Q86SE8 214 aaKnown RBP16.54■□□□□ 0.24
AMBRA1-212ENST00000534300 SCAF1Q9H7N4 1312 aaKnown RBP16.53■□□□□ 0.24
AMBRA1-212ENST00000534300 CADPSQ9ULU8 1353 aa16.53■□□□□ 0.24
AMBRA1-212ENST00000534300 PLEKHD1A6NEE1 506 aa16.49■□□□□ 0.23
AMBRA1-212ENST00000534300 STAG3Q9UJ98 1225 aa16.49■□□□□ 0.23
AMBRA1-212ENST00000534300 CANXP27824 592 aaKnown RBP16.48■□□□□ 0.23
AMBRA1-212ENST00000534300 ATAD2BQ9ULI0 1458 aa16.47■□□□□ 0.23
AMBRA1-212ENST00000534300 EEA1Q15075 1411 aa16.46■□□□□ 0.23
AMBRA1-212ENST00000534300 PLPPR3Q6T4P5 718 aa16.45■□□□□ 0.22
AMBRA1-212ENST00000534300 KCNH8Q96L42 1107 aa16.44■□□□□ 0.22
AMBRA1-212ENST00000534300 MROH2BQ7Z745 1585 aa16.42■□□□□ 0.22
AMBRA1-212ENST00000534300 TSPY4P0CV99 314 aa16.42■□□□□ 0.22
AMBRA1-212ENST00000534300 TSPY10P0CW01 314 aa16.42■□□□□ 0.22
AMBRA1-212ENST00000534300 CEP164Q9UPV0 1460 aa16.41■□□□□ 0.22
AMBRA1-212ENST00000534300 NBR1Q14596 966 aa16.4■□□□□ 0.22
AMBRA1-212ENST00000534300 ZNF326Q5BKZ1 582 aaKnown RBP16.38■□□□□ 0.21
AMBRA1-212ENST00000534300 UPF2Q9HAU5 1272 aaKnown RBP16.38■□□□□ 0.21
AMBRA1-212ENST00000534300 ANP32EQ9BTT0 268 aa16.37■□□□□ 0.21
AMBRA1-212ENST00000534300 SOGA1O94964 1423 aa16.36■□□□□ 0.21
AMBRA1-212ENST00000534300 ARID4BQ4LE39 1312 aaPredicted RBP16.36■□□□□ 0.21
AMBRA1-212ENST00000534300 HNRNPUQ00839 825 aaKnown RBP eCLIP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms