Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.49■■■□□ 2.31
SHROOM3Q8TF72 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.48■■■□□ 2.31
SHROOM3Q8TF72 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM3Q8TF72 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM3Q8TF72 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.47■■■□□ 2.31
SHROOM3Q8TF72 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.46■■■□□ 2.31
SHROOM3Q8TF72 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM3Q8TF72 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.41■■■□□ 2.3
SHROOM3Q8TF72 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM3Q8TF72 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.39■■■□□ 2.29
SHROOM3Q8TF72 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.39■■■□□ 2.29
SHROOM3Q8TF72 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM3Q8TF72 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.38■■■□□ 2.29
SHROOM3Q8TF72 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.37■■■□□ 2.29
SHROOM3Q8TF72 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM3Q8TF72 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM3Q8TF72 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM3Q8TF72 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.3■■■□□ 2.28
SHROOM3Q8TF72 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
SHROOM3Q8TF72 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.26■■■□□ 2.27
SHROOM3Q8TF72 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM3Q8TF72 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM3Q8TF72 AP002365.1-201ENST00000603448 772 ntBASIC29.25■■■□□ 2.27
SHROOM3Q8TF72 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM3Q8TF72 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM3Q8TF72 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM3Q8TF72 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM3Q8TF72 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM3Q8TF72 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM3Q8TF72 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM3Q8TF72 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM3Q8TF72 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHROOM3Q8TF72 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.11■■■□□ 2.25
SHROOM3Q8TF72 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM3Q8TF72 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM3Q8TF72 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM3Q8TF72 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM3Q8TF72 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM3Q8TF72 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
SHROOM3Q8TF72 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM3Q8TF72 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC29.04■■■□□ 2.24
SHROOM3Q8TF72 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.03■■■□□ 2.24
SHROOM3Q8TF72 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM3Q8TF72 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM3Q8TF72 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.98■■■□□ 2.23
SHROOM3Q8TF72 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM3Q8TF72 DYNLL1-208ENST00000550178 581 ntBASIC28.97■■■□□ 2.23
SHROOM3Q8TF72 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM3Q8TF72 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM3Q8TF72 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM3Q8TF72 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM3Q8TF72 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM3Q8TF72 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM3Q8TF72 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.9■■■□□ 2.22
SHROOM3Q8TF72 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM3Q8TF72 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM3Q8TF72 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.89■■■□□ 2.21
SHROOM3Q8TF72 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.87■■■□□ 2.21
SHROOM3Q8TF72 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.87■■■□□ 2.21
SHROOM3Q8TF72 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
SHROOM3Q8TF72 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM3Q8TF72 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.83■■■□□ 2.21
SHROOM3Q8TF72 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.83■■■□□ 2.2
SHROOM3Q8TF72 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHROOM3Q8TF72 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.81■■■□□ 2.2
SHROOM3Q8TF72 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.8■■■□□ 2.2
SHROOM3Q8TF72 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.8■■■□□ 2.2
SHROOM3Q8TF72 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM3Q8TF72 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM3Q8TF72 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.76■■■□□ 2.19
SHROOM3Q8TF72 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM3Q8TF72 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM3Q8TF72 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC28.75■■■□□ 2.19
SHROOM3Q8TF72 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM3Q8TF72 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM3Q8TF72 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
SHROOM3Q8TF72 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.7■■■□□ 2.19
SHROOM3Q8TF72 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.69■■■□□ 2.18
SHROOM3Q8TF72 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.67■■■□□ 2.18
SHROOM3Q8TF72 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM3Q8TF72 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM3Q8TF72 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM3Q8TF72 AL031258.1-201ENST00000623562 325 ntBASIC28.59■■■□□ 2.17
SHROOM3Q8TF72 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM3Q8TF72 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM3Q8TF72 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
SHROOM3Q8TF72 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM3Q8TF72 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.55■■■□□ 2.16
SHROOM3Q8TF72 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.55■■■□□ 2.16
SHROOM3Q8TF72 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM3Q8TF72 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
SHROOM3Q8TF72 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms