Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.71■■■□□ 2.51
BDNFP23560 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.7■■■□□ 2.51
BDNFP23560 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
BDNFP23560 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.67■■■□□ 2.5
BDNFP23560 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BDNFP23560 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BDNFP23560 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.64■■■□□ 2.5
BDNFP23560 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.62■■■□□ 2.49
BDNFP23560 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.6■■■□□ 2.49
BDNFP23560 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.6■■■□□ 2.49
BDNFP23560 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
BDNFP23560 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
BDNFP23560 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
BDNFP23560 AC145285.7-201ENST00000614819 1539 ntBASIC30.51■■■□□ 2.47
BDNFP23560 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.5■■■□□ 2.47
BDNFP23560 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
BDNFP23560 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
BDNFP23560 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.48■■■□□ 2.47
BDNFP23560 AL031258.1-201ENST00000623562 325 ntBASIC30.48■■■□□ 2.47
BDNFP23560 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
BDNFP23560 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
BDNFP23560 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
BDNFP23560 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
BDNFP23560 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
BDNFP23560 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.45■■■□□ 2.46
BDNFP23560 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
BDNFP23560 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
BDNFP23560 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
BDNFP23560 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
BDNFP23560 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
BDNFP23560 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
BDNFP23560 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
BDNFP23560 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
BDNFP23560 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
BDNFP23560 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
BDNFP23560 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
BDNFP23560 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.31■■■□□ 2.44
BDNFP23560 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.29■■■□□ 2.44
BDNFP23560 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.25■■■□□ 2.43
BDNFP23560 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
BDNFP23560 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
BDNFP23560 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.19■■■□□ 2.42
BDNFP23560 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.19■■■□□ 2.42
BDNFP23560 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.19■■■□□ 2.42
BDNFP23560 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.14■■■□□ 2.42
BDNFP23560 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
BDNFP23560 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.11■■■□□ 2.41
BDNFP23560 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
BDNFP23560 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
BDNFP23560 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.09■■■□□ 2.41
BDNFP23560 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.09■■■□□ 2.41
BDNFP23560 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
BDNFP23560 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
BDNFP23560 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
BDNFP23560 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.06■■■□□ 2.4
BDNFP23560 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
BDNFP23560 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
BDNFP23560 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC29.99■■■□□ 2.39
BDNFP23560 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
BDNFP23560 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.98■■■□□ 2.39
BDNFP23560 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
BDNFP23560 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
BDNFP23560 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
BDNFP23560 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.94■■■□□ 2.38
BDNFP23560 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.93■■■□□ 2.38
BDNFP23560 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
BDNFP23560 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.9■■■□□ 2.38
BDNFP23560 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC29.9■■■□□ 2.38
BDNFP23560 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
BDNFP23560 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
BDNFP23560 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.82■■■□□ 2.36
BDNFP23560 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
BDNFP23560 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.81■■■□□ 2.36
BDNFP23560 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.81■■■□□ 2.36
BDNFP23560 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.8■■■□□ 2.36
BDNFP23560 RARRES2P7-201ENST00000567349 469 ntBASIC29.8■■■□□ 2.36
BDNFP23560 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC29.75■■■□□ 2.35
BDNFP23560 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.74■■■□□ 2.35
BDNFP23560 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
BDNFP23560 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
BDNFP23560 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
BDNFP23560 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
BDNFP23560 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
BDNFP23560 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.67■■■□□ 2.34
BDNFP23560 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.66■■■□□ 2.34
BDNFP23560 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
BDNFP23560 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.64■■■□□ 2.34
BDNFP23560 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.63■■■□□ 2.33
BDNFP23560 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
BDNFP23560 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.62■■■□□ 2.33
BDNFP23560 SETD8P1-201ENST00000623146 1180 ntBASIC29.6■■■□□ 2.33
BDNFP23560 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
BDNFP23560 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
BDNFP23560 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC29.59■■■□□ 2.33
BDNFP23560 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
BDNFP23560 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
BDNFP23560 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
BDNFP23560 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.58■■■□□ 2.33
BDNFP23560 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.57■■■□□ 2.32
BDNFP23560 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.57■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms