Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 AC139795.1-202ENST00000500444 432 ntBASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 AC087393.1-201ENST00000582896 145 ntBASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 AL451085.2-201ENST00000605085 799 ntBASIC24.18■■□□□ 1.46
SHROOM3Q8TF72 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SHROOM3Q8TF72 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.17■■□□□ 1.46
SHROOM3Q8TF72 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
SHROOM3Q8TF72 AC138932.3-201ENST00000567634 1902 ntBASIC24.17■■□□□ 1.46
SHROOM3Q8TF72 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
SHROOM3Q8TF72 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
SHROOM3Q8TF72 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 GUK1-208ENST00000366728 842 ntTSL 2 BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM3Q8TF72 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SHROOM3Q8TF72 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SHROOM3Q8TF72 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.14■■□□□ 1.46
SHROOM3Q8TF72 ATP5G2P3-201ENST00000429083 425 ntBASIC24.14■■□□□ 1.46
SHROOM3Q8TF72 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.14■■□□□ 1.46
SHROOM3Q8TF72 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM3Q8TF72 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM3Q8TF72 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
SHROOM3Q8TF72 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM3Q8TF72 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
SHROOM3Q8TF72 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 DUX4L18-201ENST00000553347 1267 ntBASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 PVT1_1.1-201ENST00000615125 194 ntBASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM3Q8TF72 AL035685.1-201ENST00000636663 812 ntBASIC24.12■■□□□ 1.45
SHROOM3Q8TF72 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM3Q8TF72 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC24.12■■□□□ 1.45
SHROOM3Q8TF72 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM3Q8TF72 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 AC131212.1-201ENST00000613771 668 ntBASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM3Q8TF72 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.1■■□□□ 1.45
SHROOM3Q8TF72 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM3Q8TF72 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.08■■□□□ 1.45
SHROOM3Q8TF72 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
SHROOM3Q8TF72 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
SHROOM3Q8TF72 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
SHROOM3Q8TF72 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.08■■□□□ 1.45
SHROOM3Q8TF72 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
SHROOM3Q8TF72 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.08■■□□□ 1.44
SHROOM3Q8TF72 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.08■■□□□ 1.44
SHROOM3Q8TF72 FOXO3B-201ENST00000395675 1928 ntBASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 AC135731.1-201ENST00000569415 2548 ntBASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 147.2 ms