RNA–Protein interactions for RNA: ENST00000221222.15

HOMER3-201, Transcript of homer scaffold protein 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene HOMER3, Length 1,384 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-201ENST00000221222 NISCHQ9Y2I1 1504 aa56.58■■■■■ 6.65
HOMER3-201ENST00000221222 CCDC180Q9P1Z9 1646 aa50.13■■■■■ 5.62
HOMER3-201ENST00000221222 ABCC9O60706 1549 aa49.44■■■■■ 5.5
HOMER3-201ENST00000221222 ZCCHC6Q5VYS8 1495 aaKnown RBP47.26■■■■■ 5.16
HOMER3-201ENST00000221222 RB1CC1Q8TDY2 1594 aa47.04■■■■■ 5.12
HOMER3-201ENST00000221222 NACADO15069 1562 aa46.97■■■■■ 5.11
HOMER3-201ENST00000221222 MYO15BQ96JP2 1530 aa46.9■■■■■ 5.1
HOMER3-201ENST00000221222 DCAF1Q9Y4B6 1507 aa46.9■■■■■ 5.1
HOMER3-201ENST00000221222 DCAF8L2P0C7V8 631 aa46.89■■■■■ 5.1
HOMER3-201ENST00000221222 DNAJC5BQ9UF47 199 aa46.19■■■■■ 4.98
HOMER3-201ENST00000221222 PABPN1Q86U42 306 aaKnown RBP eCLIP46.08■■■■■ 4.97
HOMER3-201ENST00000221222 UNC13AQ9UPW8 1703 aa46.06■■■■■ 4.96
HOMER3-201ENST00000221222 SCRIBQ14160 1630 aa45.7■■■■■ 4.91
HOMER3-201ENST00000221222 BICRAQ9NZM4 1560 aa45.68■■■■■ 4.9
HOMER3-201ENST00000221222 SHROOM4Q9ULL8 1493 aa45.05■■■■■ 4.8
HOMER3-201ENST00000221222 CC2D2AQ9P2K1 1620 aa44.62■■■■■ 4.73
HOMER3-201ENST00000221222 EIF4G1Q04637 1599 aaKnown RBP44.54■■■■■ 4.72
HOMER3-201ENST00000221222 CECR2Q9BXF3 1484 aa44.46■■■■■ 4.71
HOMER3-201ENST00000221222 BAZ1AQ9NRL2 1556 aaPredicted RBP43.82■■■■■ 4.61
HOMER3-201ENST00000221222 SMARCA4P51532 1647 aa43.8■■■■■ 4.6
HOMER3-201ENST00000221222 MROH2BQ7Z745 1585 aa43.59■■■■■ 4.57
HOMER3-201ENST00000221222 PEG3Q9GZU2 1588 aa43.41■■■■■ 4.54
HOMER3-201ENST00000221222 ATAD2BQ9ULI0 1458 aa43.4■■■■■ 4.54
HOMER3-201ENST00000221222 SMARCA2P51531 1590 aa43.4■■■■■ 4.54
HOMER3-201ENST00000221222 NCAPD3P42695 1498 aa43.32■■■■■ 4.52
HOMER3-201ENST00000221222 RSF1Q96T23 1441 aaPredicted RBP43.28■■■■■ 4.52
HOMER3-201ENST00000221222 HMGXB3Q12766 1538 aa43.18■■■■■ 4.5
HOMER3-201ENST00000221222 WIZO95785 1651 aa43.16■■■■■ 4.5
HOMER3-201ENST00000221222 BAZ1BQ9UIG0 1483 aaKnown RBP43.07■■■■■ 4.48
HOMER3-201ENST00000221222 TOP2AP11388 1531 aaKnown RBP42.76■■■■■ 4.44
HOMER3-201ENST00000221222 ERCC6Q03468 1493 aa42.65■■■■■ 4.42
HOMER3-201ENST00000221222 NESP48681 1621 aa42.53■■■■■ 4.4
HOMER3-201ENST00000221222 SUPT5HO00267 1087 aaKnown RBP42.48■■■■■ 4.39
HOMER3-201ENST00000221222 CUX2O14529 1486 aa42.41■■■■■ 4.38
HOMER3-201ENST00000221222 CCDC88BA6NC98 1476 aa42.22■■■■■ 4.35
HOMER3-201ENST00000221222 DNAJC5Q9H3Z4 198 aa42.2■■■■■ 4.35
HOMER3-201ENST00000221222 LAMC3Q9Y6N6 1575 aa42.15■■■■■ 4.34
HOMER3-201ENST00000221222 CADPSQ9ULU8 1353 aa42.05■■■■■ 4.32
HOMER3-201ENST00000221222 THOC2Q8NI27 1593 aaKnown RBP42■■■■■ 4.31
HOMER3-201ENST00000221222 KIF21AQ7Z4S6 1674 aa41.98■■■■■ 4.31
HOMER3-201ENST00000221222 CFTRP13569 1480 aa41.94■■■■■ 4.31
HOMER3-201ENST00000221222 PDS5BQ9NTI5 1447 aa41.9■■■■■ 4.3
HOMER3-201ENST00000221222 PRDM2Q13029 1718 aa41.75■■■■■ 4.27
HOMER3-201ENST00000221222 FANCD2Q9BXW9 1451 aa41.58■■■■■ 4.25
HOMER3-201ENST00000221222 MRC2Q9UBG0 1479 aa41.57■■■■■ 4.24
HOMER3-201ENST00000221222 CEP164Q9UPV0 1460 aa41.47■■■■■ 4.23
HOMER3-201ENST00000221222 WDR62O43379 1518 aa41.44■■■■■ 4.22
HOMER3-201ENST00000221222 URB2Q14146 1524 aaKnown RBP41.14■■■■■ 4.18
HOMER3-201ENST00000221222 ABCC8Q09428 1581 aa41.02■■■■■ 4.16
HOMER3-201ENST00000221222 DNMBPQ6XZF7 1577 aa41■■■■■ 4.15
HOMER3-201ENST00000221222 TOPBP1Q92547 1522 aa40.98■■■■■ 4.15
HOMER3-201ENST00000221222 CUX1P39880 1505 aa40.87■■■■■ 4.13
HOMER3-201ENST00000221222 WRNQ14191 1432 aaPredicted RBP eCLIP40.79■■■■■ 4.12
HOMER3-201ENST00000221222 BIVM-ERCC5R4GMW8 1640 aa40.71■■■■■ 4.11
HOMER3-201ENST00000221222 TOP2BQ02880 1626 aa40.69■■■■■ 4.1
HOMER3-201ENST00000221222 SYNJ1O43426 1573 aa40.69■■■■■ 4.1
HOMER3-201ENST00000221222 POLA1P09884 1462 aaPredicted RBP40.67■■■■■ 4.1
HOMER3-201ENST00000221222 FGD5Q6ZNL6 1462 aa40.64■■■■■ 4.1
HOMER3-201ENST00000221222 IFT140Q96RY7 1462 aa40.6■■■■■ 4.09
HOMER3-201ENST00000221222 TRIM41Q8WV44 630 aa40.59■■■■■ 4.09
HOMER3-201ENST00000221222 ZNF608Q9ULD9 1512 aaPredicted RBP40.58■■■■■ 4.09
HOMER3-201ENST00000221222 OSCARQ8IYS5 282 aa40.54■■■■■ 4.08
HOMER3-201ENST00000221222 TARBP1Q13395 1621 aaKnown RBP40.53■■■■■ 4.08
HOMER3-201ENST00000221222 SOGA1O94964 1423 aa40.48■■■■■ 4.07
HOMER3-201ENST00000221222 RAD54L2Q9Y4B4 1467 aa40.45■■■■■ 4.07
HOMER3-201ENST00000221222 WDR97A6NE52 1622 aa40.35■■■■■ 4.05
HOMER3-201ENST00000221222 EIF4G3O43432 1585 aaKnown RBP40.35■■■■■ 4.05
HOMER3-201ENST00000221222 ABCA10Q8WWZ4 1543 aa40.3■■■■■ 4.04
HOMER3-201ENST00000221222 AQRO60306 1485 aaKnown RBP eCLIP40.23■■■■■ 4.03
HOMER3-201ENST00000221222 TDRD9Q8NDG6 1382 aaKnown RBP40.16■■■■■ 4.02
HOMER3-201ENST00000221222 ABCA5Q8WWZ7 1642 aa40.12■■■■■ 4.01
HOMER3-201ENST00000221222 CHD1O14646 1710 aa40.05■■■■■ 4
HOMER3-201ENST00000221222 RIMBP3CA6NJZ7 1639 aa40.05■■■■■ 4
HOMER3-201ENST00000221222 RIMBP3BA6NNM3 1639 aa40.05■■■■■ 4
HOMER3-201ENST00000221222 RIMBP3Q9UFD9 1639 aa40.05■■■■■ 4
HOMER3-201ENST00000221222 GAPVD1Q14C86 1478 aa40.04■■■■■ 4
HOMER3-201ENST00000221222 CHIC1Q5VXU3 224 aa40■■■■□ 3.99
HOMER3-201ENST00000221222 PBRM1Q86U86 1689 aa39.98■■■■□ 3.99
HOMER3-201ENST00000221222 FBLN2P98095 1184 aa39.97■■■■□ 3.99
HOMER3-201ENST00000221222 GRIN2BQ13224 1484 aa39.97■■■■□ 3.99
HOMER3-201ENST00000221222 ARHGEF11O15085 1522 aa39.92■■■■□ 3.98
HOMER3-201ENST00000221222 KIF27Q86VH2 1401 aa39.9■■■■□ 3.98
HOMER3-201ENST00000221222 ERICH3Q5RHP9 1530 aa39.83■■■■□ 3.97
HOMER3-201ENST00000221222 SNAPC4Q5SXM2 1469 aa39.83■■■■□ 3.97
HOMER3-201ENST00000221222 MAGI1Q96QZ7 1491 aaPredicted RBP39.83■■■■□ 3.97
HOMER3-201ENST00000221222 RUSC2Q8N2Y8 1516 aa39.68■■■■□ 3.94
HOMER3-201ENST00000221222 ADAMTS12P58397 1594 aa39.67■■■■□ 3.94
HOMER3-201ENST00000221222 IGF1RP08069 1367 aa39.66■■■■□ 3.94
HOMER3-201ENST00000221222 SYNJ2O15056 1496 aa39.65■■■■□ 3.94
HOMER3-201ENST00000221222 CYB5RLQ6IPT4 315 aa39.65■■■■□ 3.94
HOMER3-201ENST00000221222 CHMP7Q8WUX9 453 aaPredicted RBP39.64■■■■□ 3.94
HOMER3-201ENST00000221222 FHAD1B1AJZ9 1412 aa39.61■■■■□ 3.93
HOMER3-201ENST00000221222 CUL7Q14999 1698 aa39.59■■■■□ 3.93
HOMER3-201ENST00000221222 ARAP1Q96P48 1450 aa39.56■■■■□ 3.92
HOMER3-201ENST00000221222 CLASP1Q7Z460 1538 aa39.52■■■■□ 3.92
HOMER3-201ENST00000221222 EEA1Q15075 1411 aa39.51■■■■□ 3.92
HOMER3-201ENST00000221222 GRIN2AQ12879 1464 aa39.47■■■■□ 3.91
HOMER3-201ENST00000221222 CARMIL1Q5VZK9 1371 aa39.42■■■■□ 3.9
HOMER3-201ENST00000221222 CSRNP3Q8WYN3 585 aa39.33■■■■□ 3.89
HOMER3-201ENST00000221222 PRXQ9BXM0 1461 aa39.28■■■■□ 3.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms