Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.53■■■□□ 2.64
USP44Q9H0E7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USP44Q9H0E7 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP44Q9H0E7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
USP44Q9H0E7 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP44Q9H0E7 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.52■■■□□ 2.64
USP44Q9H0E7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
USP44Q9H0E7 LINC01003-201ENST00000564834 1764 ntBASIC31.51■■■□□ 2.64
USP44Q9H0E7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
USP44Q9H0E7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.51■■■□□ 2.63
USP44Q9H0E7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.51■■■□□ 2.63
USP44Q9H0E7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
USP44Q9H0E7 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
USP44Q9H0E7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USP44Q9H0E7 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.5■■■□□ 2.63
USP44Q9H0E7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
USP44Q9H0E7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USP44Q9H0E7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP44Q9H0E7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.48■■■□□ 2.63
USP44Q9H0E7 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
USP44Q9H0E7 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP44Q9H0E7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP44Q9H0E7 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP44Q9H0E7 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC31.47■■■□□ 2.63
USP44Q9H0E7 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.47■■■□□ 2.63
USP44Q9H0E7 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.46■■■□□ 2.63
USP44Q9H0E7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
USP44Q9H0E7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
USP44Q9H0E7 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.44■■■□□ 2.62
USP44Q9H0E7 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USP44Q9H0E7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
USP44Q9H0E7 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
USP44Q9H0E7 HSD17B1P1-201ENST00000590052 955 ntBASIC31.43■■■□□ 2.62
USP44Q9H0E7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
USP44Q9H0E7 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP44Q9H0E7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
USP44Q9H0E7 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP44Q9H0E7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.41■■■□□ 2.62
USP44Q9H0E7 AC060814.1-201ENST00000554326 538 ntBASIC31.41■■■□□ 2.62
USP44Q9H0E7 BX255925.1-201ENST00000566954 1854 ntBASIC31.41■■■□□ 2.62
USP44Q9H0E7 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.41■■■□□ 2.62
USP44Q9H0E7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP44Q9H0E7 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
USP44Q9H0E7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
USP44Q9H0E7 GPX1-201ENST00000419349 1106 ntBASIC31.4■■■□□ 2.62
USP44Q9H0E7 AC022413.1-201ENST00000624602 984 ntBASIC31.4■■■□□ 2.62
USP44Q9H0E7 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP44Q9H0E7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.4■■■□□ 2.62
USP44Q9H0E7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP44Q9H0E7 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
USP44Q9H0E7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP44Q9H0E7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.39■■■□□ 2.62
USP44Q9H0E7 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
USP44Q9H0E7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.37■■■□□ 2.61
USP44Q9H0E7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.37■■■□□ 2.61
USP44Q9H0E7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.37■■■□□ 2.61
USP44Q9H0E7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP44Q9H0E7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP44Q9H0E7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP44Q9H0E7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP44Q9H0E7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.35■■■□□ 2.61
USP44Q9H0E7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP44Q9H0E7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
USP44Q9H0E7 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP44Q9H0E7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.33■■■□□ 2.61
USP44Q9H0E7 AL359258.2-201ENST00000564063 1566 ntBASIC31.33■■■□□ 2.61
USP44Q9H0E7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
USP44Q9H0E7 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP44Q9H0E7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP44Q9H0E7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.31■■■□□ 2.6
USP44Q9H0E7 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
USP44Q9H0E7 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
USP44Q9H0E7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
USP44Q9H0E7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
USP44Q9H0E7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP44Q9H0E7 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP44Q9H0E7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP44Q9H0E7 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.3■■■□□ 2.6
USP44Q9H0E7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC31.3■■■□□ 2.6
USP44Q9H0E7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP44Q9H0E7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC31.3■■■□□ 2.6
USP44Q9H0E7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP44Q9H0E7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.29■■■□□ 2.6
USP44Q9H0E7 AC092296.2-201ENST00000589470 999 ntBASIC31.29■■■□□ 2.6
USP44Q9H0E7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP44Q9H0E7 WHAMMP3-201ENST00000611636 1609 ntBASIC31.27■■■□□ 2.6
USP44Q9H0E7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.26■■■□□ 2.59
USP44Q9H0E7 AL157400.5-201ENST00000507624 621 ntBASIC31.26■■■□□ 2.59
USP44Q9H0E7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC31.25■■■□□ 2.59
USP44Q9H0E7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP44Q9H0E7 AC126177.7-201ENST00000547904 679 ntBASIC31.25■■■□□ 2.59
USP44Q9H0E7 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP44Q9H0E7 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.24■■■□□ 2.59
USP44Q9H0E7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.24■■■□□ 2.59
USP44Q9H0E7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP44Q9H0E7 RNF126P1-201ENST00000567452 1320 ntBASIC31.24■■■□□ 2.59
USP44Q9H0E7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP44Q9H0E7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.23■■■□□ 2.59
USP44Q9H0E7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP44Q9H0E7 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms