Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AC126177.7-201ENST00000547904 679 ntBASIC31.51■■■□□ 2.63
SYNE4Q8N205 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
SYNE4Q8N205 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
SYNE4Q8N205 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SYNE4Q8N205 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SYNE4Q8N205 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.5■■■□□ 2.63
SYNE4Q8N205 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SYNE4Q8N205 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
SYNE4Q8N205 AL359258.2-201ENST00000564063 1566 ntBASIC31.5■■■□□ 2.63
SYNE4Q8N205 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SYNE4Q8N205 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.49■■■□□ 2.63
SYNE4Q8N205 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC31.48■■■□□ 2.63
SYNE4Q8N205 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.48■■■□□ 2.63
SYNE4Q8N205 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.47■■■□□ 2.63
SYNE4Q8N205 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.46■■■□□ 2.63
SYNE4Q8N205 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.46■■■□□ 2.63
SYNE4Q8N205 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SYNE4Q8N205 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.46■■■□□ 2.63
SYNE4Q8N205 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SYNE4Q8N205 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
SYNE4Q8N205 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.45■■■□□ 2.63
SYNE4Q8N205 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SYNE4Q8N205 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
SYNE4Q8N205 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SYNE4Q8N205 AC007029.1-201ENST00000604183 313 ntBASIC31.44■■■□□ 2.62
SYNE4Q8N205 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SYNE4Q8N205 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SYNE4Q8N205 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.43■■■□□ 2.62
SYNE4Q8N205 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SYNE4Q8N205 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.42■■■□□ 2.62
SYNE4Q8N205 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SYNE4Q8N205 AC009831.1-201ENST00000580420 1582 ntBASIC31.42■■■□□ 2.62
SYNE4Q8N205 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SYNE4Q8N205 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SYNE4Q8N205 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
SYNE4Q8N205 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SYNE4Q8N205 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SYNE4Q8N205 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SYNE4Q8N205 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SYNE4Q8N205 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.4■■■□□ 2.62
SYNE4Q8N205 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
SYNE4Q8N205 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SYNE4Q8N205 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SYNE4Q8N205 AP002414.2-202ENST00000590929 1450 ntBASIC31.39■■■□□ 2.62
SYNE4Q8N205 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SYNE4Q8N205 SMPD5-203ENST00000639008 1464 ntBASIC31.38■■■□□ 2.61
SYNE4Q8N205 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SYNE4Q8N205 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.37■■■□□ 2.61
SYNE4Q8N205 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
SYNE4Q8N205 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
SYNE4Q8N205 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SYNE4Q8N205 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SYNE4Q8N205 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SYNE4Q8N205 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.36■■■□□ 2.61
SYNE4Q8N205 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC31.36■■■□□ 2.61
SYNE4Q8N205 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
SYNE4Q8N205 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SYNE4Q8N205 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SYNE4Q8N205 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SYNE4Q8N205 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.36■■■□□ 2.61
SYNE4Q8N205 AL592293.1-201ENST00000502889 1188 ntBASIC31.36■■■□□ 2.61
SYNE4Q8N205 AC133552.2-201ENST00000619106 1032 ntBASIC31.35■■■□□ 2.61
SYNE4Q8N205 AC129492.7-201ENST00000622992 756 ntBASIC31.35■■■□□ 2.61
SYNE4Q8N205 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SYNE4Q8N205 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SYNE4Q8N205 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SYNE4Q8N205 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.34■■■□□ 2.61
SYNE4Q8N205 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SYNE4Q8N205 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SYNE4Q8N205 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.33■■■□□ 2.61
SYNE4Q8N205 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.32■■■□□ 2.6
SYNE4Q8N205 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.32■■■□□ 2.6
SYNE4Q8N205 AC025884.2-201ENST00000553429 711 ntBASIC31.32■■■□□ 2.6
SYNE4Q8N205 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SYNE4Q8N205 DUX4L18-201ENST00000553347 1267 ntBASIC31.31■■■□□ 2.6
SYNE4Q8N205 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SYNE4Q8N205 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
SYNE4Q8N205 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SYNE4Q8N205 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.3■■■□□ 2.6
SYNE4Q8N205 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SYNE4Q8N205 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SYNE4Q8N205 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.3■■■□□ 2.6
SYNE4Q8N205 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
SYNE4Q8N205 AC026202.3-201ENST00000600805 1127 ntBASIC31.3■■■□□ 2.6
SYNE4Q8N205 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.3■■■□□ 2.6
SYNE4Q8N205 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SYNE4Q8N205 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
SYNE4Q8N205 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
SYNE4Q8N205 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SYNE4Q8N205 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.28■■■□□ 2.6
SYNE4Q8N205 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.28■■■□□ 2.6
SYNE4Q8N205 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.28■■■□□ 2.6
SYNE4Q8N205 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.28■■■□□ 2.6
SYNE4Q8N205 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SYNE4Q8N205 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SYNE4Q8N205 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.27■■■□□ 2.6
SYNE4Q8N205 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SYNE4Q8N205 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.26■■■□□ 2.6
SYNE4Q8N205 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.6
SYNE4Q8N205 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 254 ms