Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
BLOC1S4Q9NUP1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.11
BLOC1S4Q9NUP1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
BLOC1S4Q9NUP1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
BLOC1S4Q9NUP1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
BLOC1S4Q9NUP1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
BLOC1S4Q9NUP1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
BLOC1S4Q9NUP1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.18■■■□□ 2.1
BLOC1S4Q9NUP1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
BLOC1S4Q9NUP1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
BLOC1S4Q9NUP1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
BLOC1S4Q9NUP1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
BLOC1S4Q9NUP1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.16■■■□□ 2.1
BLOC1S4Q9NUP1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
BLOC1S4Q9NUP1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
BLOC1S4Q9NUP1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BLOC1S4Q9NUP1 CR559946.2-201ENST00000623684 991 ntBASIC28.15■■■□□ 2.1
BLOC1S4Q9NUP1 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
BLOC1S4Q9NUP1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BLOC1S4Q9NUP1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.15■■■□□ 2.1
BLOC1S4Q9NUP1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
BLOC1S4Q9NUP1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.14■■■□□ 2.1
BLOC1S4Q9NUP1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.14■■■□□ 2.1
BLOC1S4Q9NUP1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.14■■■□□ 2.1
BLOC1S4Q9NUP1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
BLOC1S4Q9NUP1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
BLOC1S4Q9NUP1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
BLOC1S4Q9NUP1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
BLOC1S4Q9NUP1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
BLOC1S4Q9NUP1 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
BLOC1S4Q9NUP1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
BLOC1S4Q9NUP1 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
BLOC1S4Q9NUP1 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
BLOC1S4Q9NUP1 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.11■■■□□ 2.09
BLOC1S4Q9NUP1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.11■■■□□ 2.09
BLOC1S4Q9NUP1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
BLOC1S4Q9NUP1 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
BLOC1S4Q9NUP1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
BLOC1S4Q9NUP1 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
BLOC1S4Q9NUP1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 MIR7108-201ENST00000614319 87 ntBASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
BLOC1S4Q9NUP1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 MIR3648-2-201ENST00000581792 180 ntBASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 MIR3648-1-201ENST00000615959 180 ntBASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
BLOC1S4Q9NUP1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
BLOC1S4Q9NUP1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.07■■■□□ 2.08
BLOC1S4Q9NUP1 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC28.07■■■□□ 2.08
BLOC1S4Q9NUP1 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
BLOC1S4Q9NUP1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
BLOC1S4Q9NUP1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
BLOC1S4Q9NUP1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.06■■■□□ 2.08
BLOC1S4Q9NUP1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
BLOC1S4Q9NUP1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
BLOC1S4Q9NUP1 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
BLOC1S4Q9NUP1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
BLOC1S4Q9NUP1 AL121749.1-202ENST00000609313 2153 ntBASIC28.04■■■□□ 2.08
BLOC1S4Q9NUP1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.04■■■□□ 2.08
BLOC1S4Q9NUP1 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
BLOC1S4Q9NUP1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
BLOC1S4Q9NUP1 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
BLOC1S4Q9NUP1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
BLOC1S4Q9NUP1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
BLOC1S4Q9NUP1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
BLOC1S4Q9NUP1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
BLOC1S4Q9NUP1 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
BLOC1S4Q9NUP1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
BLOC1S4Q9NUP1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
BLOC1S4Q9NUP1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
BLOC1S4Q9NUP1 HLA-V-202ENST00000446817 847 ntBASIC28.01■■■□□ 2.07
BLOC1S4Q9NUP1 AC016575.1-201ENST00000607026 382 ntBASIC28.01■■■□□ 2.07
BLOC1S4Q9NUP1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.01■■■□□ 2.07
BLOC1S4Q9NUP1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
BLOC1S4Q9NUP1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28■■■□□ 2.07
BLOC1S4Q9NUP1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28■■■□□ 2.07
BLOC1S4Q9NUP1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28■■■□□ 2.07
BLOC1S4Q9NUP1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
BLOC1S4Q9NUP1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.99■■■□□ 2.07
BLOC1S4Q9NUP1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC27.99■■■□□ 2.07
BLOC1S4Q9NUP1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC27.99■■■□□ 2.07
BLOC1S4Q9NUP1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
BLOC1S4Q9NUP1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.98■■■□□ 2.07
BLOC1S4Q9NUP1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
BLOC1S4Q9NUP1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
BLOC1S4Q9NUP1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
BLOC1S4Q9NUP1 AC008813.1-201ENST00000536597 885 ntBASIC27.97■■■□□ 2.07
BLOC1S4Q9NUP1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
BLOC1S4Q9NUP1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.96■■■□□ 2.07
BLOC1S4Q9NUP1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC27.96■■■□□ 2.07
BLOC1S4Q9NUP1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
BLOC1S4Q9NUP1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
BLOC1S4Q9NUP1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms