Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SCN1AP35498 MIR219A2-201ENST00000608502 1504 ntBASIC27.15■■□□□ 1.94
SCN1AP35498 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SCN1AP35498 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SCN1AP35498 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SCN1AP35498 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
SCN1AP35498 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SCN1AP35498 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SCN1AP35498 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
SCN1AP35498 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SCN1AP35498 HSD17B1P1-201ENST00000590052 955 ntBASIC27.11■■□□□ 1.93
SCN1AP35498 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
SCN1AP35498 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SCN1AP35498 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SCN1AP35498 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SCN1AP35498 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC27.11■■□□□ 1.93
SCN1AP35498 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SCN1AP35498 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SCN1AP35498 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SCN1AP35498 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SCN1AP35498 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SCN1AP35498 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC27.09■■□□□ 1.93
SCN1AP35498 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SCN1AP35498 TPT1-202ENST00000379055 948 ntTSL 2 BASIC27.08■■□□□ 1.93
SCN1AP35498 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
SCN1AP35498 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SCN1AP35498 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SCN1AP35498 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.92
SCN1AP35498 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
SCN1AP35498 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC27.07■■□□□ 1.92
SCN1AP35498 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SCN1AP35498 AC018358.1-201ENST00000631079 1402 ntBASIC27.06■■□□□ 1.92
SCN1AP35498 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SCN1AP35498 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SCN1AP35498 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SCN1AP35498 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC27.06■■□□□ 1.92
SCN1AP35498 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SCN1AP35498 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SCN1AP35498 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.05■■□□□ 1.92
SCN1AP35498 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
SCN1AP35498 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC27.05■■□□□ 1.92
SCN1AP35498 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.05■■□□□ 1.92
SCN1AP35498 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SCN1AP35498 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
SCN1AP35498 PROC-203ENST00000409048 1586 ntTSL 5 BASIC27.03■■□□□ 1.92
SCN1AP35498 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC27.03■■□□□ 1.92
SCN1AP35498 AC060814.1-201ENST00000554326 538 ntBASIC27.03■■□□□ 1.92
SCN1AP35498 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
SCN1AP35498 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SCN1AP35498 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
SCN1AP35498 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.03■■□□□ 1.92
SCN1AP35498 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SCN1AP35498 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SCN1AP35498 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.02■■□□□ 1.92
SCN1AP35498 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC27.02■■□□□ 1.92
SCN1AP35498 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
SCN1AP35498 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.01■■□□□ 1.92
SCN1AP35498 GPX1-201ENST00000419349 1106 ntBASIC27.01■■□□□ 1.91
SCN1AP35498 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC27.01■■□□□ 1.91
SCN1AP35498 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
SCN1AP35498 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC27■■□□□ 1.91
SCN1AP35498 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC27■■□□□ 1.91
SCN1AP35498 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SCN1AP35498 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC27■■□□□ 1.91
SCN1AP35498 MED25-210ENST00000612854 801 ntTSL 5 BASIC27■■□□□ 1.91
SCN1AP35498 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC27■■□□□ 1.91
SCN1AP35498 MED25-214ENST00000622402 642 ntTSL 5 BASIC27■■□□□ 1.91
SCN1AP35498 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SCN1AP35498 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.99■■□□□ 1.91
SCN1AP35498 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.99■■□□□ 1.91
SCN1AP35498 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
SCN1AP35498 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
SCN1AP35498 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SCN1AP35498 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SCN1AP35498 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SCN1AP35498 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SCN1AP35498 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SCN1AP35498 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SCN1AP35498 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC26.97■■□□□ 1.91
SCN1AP35498 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.97■■□□□ 1.91
SCN1AP35498 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SCN1AP35498 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.96■■□□□ 1.91
SCN1AP35498 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.96■■□□□ 1.91
SCN1AP35498 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.96■■□□□ 1.91
SCN1AP35498 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SCN1AP35498 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.95■■□□□ 1.91
SCN1AP35498 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.95■■□□□ 1.91
SCN1AP35498 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SCN1AP35498 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SCN1AP35498 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.91
SCN1AP35498 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SCN1AP35498 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.94■■□□□ 1.9
SCN1AP35498 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SCN1AP35498 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.94■■□□□ 1.9
SCN1AP35498 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
SCN1AP35498 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms