RNA–Protein interactions for RNA: ENST00000470558.5

ARF1-203, Transcript of ADP ribosylation factor 1, humanhuman

TSL 2

Gene ARF1, Length 820 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARF1-203ENST00000470558 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.56□□□□□ -0.081e-323■■■■□ 23.4
ARF1-203ENST00000470558 UPF1Q92900 1129 aaKnown RBP eCLIP21.35■■□□□ 1.013e-93■■■■■ 111.5
ARF1-203ENST00000470558 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.55■□□□□ 0.083e-74■■■□□ 16.3
ARF1-203ENST00000470558 DDX3XO00571 662 aaKnown RBP eCLIP16.23■□□□□ 0.192e-68■■■□□ 17.1
ARF1-203ENST00000470558 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.61■□□□□ 0.091e-44■■■□□ 16.5
ARF1-203ENST00000470558 AKAP1Q92667 903 aaKnown RBP eCLIP13.65□□□□□ -0.226e-36■■□□□ 13.7
ARF1-203ENST00000470558 PUM1Q14671 1186 aaKnown RBP eCLIP15.71■□□□□ 0.113e-32■□□□□ 9.1
ARF1-203ENST00000470558 SUB1P53999 127 aaKnown RBP eCLIP11.96□□□□□ -0.494e-30■□□□□ 10.9
ARF1-203ENST00000470558 LARP4Q71RC2 724 aaKnown RBP eCLIP14.46□□□□□ -0.097e-29■■■□□ 19.2
ARF1-203ENST00000470558 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.91■□□□□ 0.628e-20■□□□□ 8.9
ARF1-203ENST00000470558 DDX6P26196 483 aaKnown RBP eCLIP16.57■□□□□ 0.241e-17■□□□□ 9.2
ARF1-203ENST00000470558 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.27■□□□□ 0.22e-16■□□□□ 9.1
ARF1-203ENST00000470558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.95■■□□□ 1.581e-15■□□□□ 8.1
ARF1-203ENST00000470558 YBX3P16989 372 aaKnown RBP eCLIP20.08■□□□□ 0.812e-15■□□□□ 9
ARF1-203ENST00000470558 PCBP1Q15365 356 aaKnown RBP eCLIP17.33■□□□□ 0.361e-12■□□□□ 11.1
ARF1-203ENST00000470558 RPS3P23396 243 aaKnown RBP eCLIP15.3■□□□□ 0.043e-12■■■□□ 15.7
ARF1-203ENST00000470558 TIA1P31483 386 aaKnown RBP eCLIP14.6□□□□□ -0.071e-11■□□□□ 10
ARF1-203ENST00000470558 SND1Q7KZF4 910 aaKnown RBP eCLIP16.23■□□□□ 0.192e-11■□□□□ 10.8
ARF1-203ENST00000470558 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.28■□□□□ 0.28e-11■□□□□ 10.7
ARF1-203ENST00000470558 IGF2BP3O00425 579 aaKnown RBP eCLIP18.73■□□□□ 0.591e-10■■□□□ 12.3
ARF1-203ENST00000470558 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.31□□□□□ -0.282e-10■■□□□ 12
ARF1-203ENST00000470558 FMR1Q06787 632 aaKnown RBP eCLIP19.2■□□□□ 0.665e-10■■□□□ 13.3
ARF1-203ENST00000470558 PPIGQ13427 754 aaKnown RBP eCLIP17.64■□□□□ 0.417e-10■□□□□ 8.4
ARF1-203ENST00000470558 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.17■□□□□ 0.51e-9■□□□□ 9.5
ARF1-203ENST00000470558 PTBP1P26599 531 aaKnown RBP eCLIP12.22□□□□□ -0.453e-9■□□□□ 11
ARF1-203ENST00000470558 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.01□□□□□ -0.013e-9■■■■■ 79.8
ARF1-203ENST00000470558 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.59■□□□□ 0.415e-9■■■■■ 30.7
ARF1-203ENST00000470558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.97■■□□□ 1.437e-9■■□□□ 12.8
ARF1-203ENST00000470558 EFTUD2Q15029 972 aaKnown RBP eCLIP15.08■□□□□ 01e-8■■■■□ 26.6
ARF1-203ENST00000470558 METAP2P50579 478 aaKnown RBP eCLIP18.11■□□□□ 0.492e-8■■□□□ 13.8
ARF1-203ENST00000470558 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.56□□□□□ -0.086e-8■■■□□ 18.7
ARF1-203ENST00000470558 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.7■□□□□ 0.268e-8■□□□□ 10
ARF1-203ENST00000470558 SF3B4Q15427 424 aaKnown RBP eCLIP14.17□□□□□ -0.141e-7■■□□□ 13
ARF1-203ENST00000470558 TARDBPQ13148 414 aaKnown RBP eCLIP15.37■□□□□ 0.051e-7■■■□□ 19.2
ARF1-203ENST00000470558 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.98■□□□□ 0.311e-7■□□□□ 10.8
ARF1-203ENST00000470558 NONOQ15233 471 aaKnown RBP eCLIP17.8■□□□□ 0.441e-7■■■■□ 24.3
ARF1-203ENST00000470558 SMNDC1O75940 238 aaKnown RBP eCLIP13.96□□□□□ -0.172e-7■□□□□ 11.2
ARF1-203ENST00000470558 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.95■□□□□ 0.623e-7■□□□□ 8.9
ARF1-203ENST00000470558 SF3B1O75533 1304 aaKnown RBP eCLIP16.99■□□□□ 0.314e-7■■■■■ 86.2
ARF1-203ENST00000470558 ILF3Q12906 894 aaKnown RBP eCLIP15.49■□□□□ 0.074e-7■■□□□ 13.1
ARF1-203ENST00000470558 EWSR1Q01844 656 aaKnown RBP eCLIP11.59□□□□□ -0.555e-7■■■□□ 15.5
ARF1-203ENST00000470558 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.3■□□□□ 0.045e-7■■■■■ 31.3
ARF1-203ENST00000470558 AQRO60306 1485 aaKnown RBP eCLIP27.09■■□□□ 1.935e-7■■■■□ 21.3
ARF1-203ENST00000470558 WRNQ14191 1432 aaPredicted RBP eCLIP27.22■■□□□ 1.956e-7■■■■■ 33.4
ARF1-203ENST00000470558 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.77■■□□□ 1.087e-7■■□□□ 13.6
ARF1-203ENST00000470558 ZRANB2O95218 330 aaKnown RBP eCLIP15.86■□□□□ 0.137e-7■■■□□ 16.6
ARF1-203ENST00000470558 HNRNPMP52272 730 aaKnown RBP eCLIP24.42■■□□□ 1.57e-7■■■■□ 22.9
ARF1-203ENST00000470558 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.57□□□□□ -0.47e-7■■■□□ 14.9
ARF1-203ENST00000470558 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.72■□□□□ 0.279e-7■■■■■ 48.3
ARF1-203ENST00000470558 GTF2F1P35269 517 aaKnown RBP eCLIP17■□□□□ 0.311e-6■■■■□ 26.3
ARF1-203ENST00000470558 HNRNPUQ00839 825 aaKnown RBP eCLIP20.09■□□□□ 0.811e-6■□□□□ 8.3
ARF1-203ENST00000470558 TAF15Q92804 592 aaKnown RBP eCLIP12.62□□□□□ -0.391e-6■■■□□ 18.3
ARF1-203ENST00000470558 FUSP35637 526 aaKnown RBP eCLIP10.35□□□□□ -0.751e-6■■■□□ 18
ARF1-203ENST00000470558 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.42■□□□□ 0.381e-6■■■■■ 29.1
ARF1-203ENST00000470558 AATFQ9NY61 560 aaKnown RBP eCLIP18.99■□□□□ 0.631e-6■■□□□ 14.3
ARF1-203ENST00000470558 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.84□□□□□ -0.031e-6■■■■■ 92.8
ARF1-203ENST00000470558 LSM11P83369 360 aaKnown RBP eCLIP13.78□□□□□ -0.22e-6■□□□□ 9.9
ARF1-203ENST00000470558 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.17■□□□□ 0.182e-6■□□□□ 8.9
ARF1-203ENST00000470558 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.4■□□□□ 0.062e-6■■■□□ 17.8
ARF1-203ENST00000470558 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.54□□□□□ -0.083e-6■■■□□ 15
ARF1-203ENST00000470558 EIF3GO75821 320 aaKnown RBP eCLIP11.32□□□□□ -0.64e-6■■■□□ 15.9
ARF1-203ENST00000470558 CDC40O60508 579 aaKnown RBP eCLIP14.32□□□□□ -0.124e-6■□□□□ 9.9
ARF1-203ENST00000470558 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.25■□□□□ 0.515e-6■■■■■ 45.5
ARF1-203ENST00000470558 EIF4G2P78344 907 aaKnown RBP eCLIP21.93■■□□□ 1.16e-6■□□□□ 8.5
ARF1-203ENST00000470558 MATR3P43243 847 aaKnown RBP eCLIP17.13■□□□□ 0.336e-6■■■■□ 21.9
ARF1-203ENST00000470558 FKBP4Q02790 459 aaKnown RBP eCLIP19.78■□□□□ 0.766e-6■□□□□ 9.8
Retrieved 66 of 66 RNA–protein pairs in 15.7 ms