RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeastyeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPL40BYKR094C CST6P40535 587 aa7.02□□□□□ -1.29
RPL40BYKR094C COX6P00427 148 aa7.01□□□□□ -1.29
RPL40BYKR094C SEC2P17065 759 aa7.01□□□□□ -1.29
RPL40BYKR094C MVP1P40959 511 aaKnown RBP7.01□□□□□ -1.29
RPL40BYKR094C GCD11P32481 527 aaKnown RBP7□□□□□ -1.29
RPL40BYKR094C AIR1P40507 360 aaKnown RBP7□□□□□ -1.29
RPL40BYKR094C MAK21Q12176 1025 aaKnown RBP7□□□□□ -1.29
RPL40BYKR094C CLA4P48562 842 aa6.99□□□□□ -1.29
RPL40BYKR094C YPR109WQ06104 294 aa6.97□□□□□ -1.29
RPL40BYKR094C RGR1P19263 1082 aa6.96□□□□□ -1.3
RPL40BYKR094C SPT16P32558 1035 aaKnown RBP6.96□□□□□ -1.3
RPL40BYKR094C LAM6Q08001 693 aa6.95□□□□□ -1.3
RPL40BYKR094C RRN7P40992 514 aa6.94□□□□□ -1.3
RPL40BYKR094C FRK1Q03002 865 aaPredicted RBP6.93□□□□□ -1.3
RPL40BYKR094C BRE2P43132 505 aa6.92□□□□□ -1.3
RPL40BYKR094C KEX2P13134 814 aa6.89□□□□□ -1.31
RPL40BYKR094C BDP1P46678 594 aa6.89□□□□□ -1.31
RPL40BYKR094C ERF2Q06551 359 aa6.89□□□□□ -1.31
RPL40BYKR094C PBS2P08018 668 aa6.86□□□□□ -1.31
RPL40BYKR094C PAT1P25644 796 aaKnown RBP6.86□□□□□ -1.31
RPL40BYKR094C YPL062WQ02781 134 aa6.85□□□□□ -1.31
RPL40BYKR094C CDC4P07834 779 aa6.84□□□□□ -1.31
RPL40BYKR094C GCR2Q01722 534 aa6.84□□□□□ -1.31
RPL40BYKR094C GAR1P28007 205 aaKnown RBP6.83□□□□□ -1.32
RPL40BYKR094C PAC1P39946 494 aaKnown RBP6.82□□□□□ -1.32
RPL40BYKR094C PSE1P32337 1089 aaKnown RBP6.81□□□□□ -1.32
RPL40BYKR094C CKB1P43639 278 aa6.81□□□□□ -1.32
RPL40BYKR094C HED1Q03937 162 aa6.8□□□□□ -1.32
RPL40BYKR094C AGE1Q04412 482 aa6.78□□□□□ -1.32
RPL40BYKR094C GBP2P25555 427 aaKnown RBP RIP-Chip data6.77□□□□□ -1.33not detected
RPL40BYKR094C MOD5P07884 428 aa6.76□□□□□ -1.33
RPL40BYKR094C TUB4P53378 473 aa6.76□□□□□ -1.33
RPL40BYKR094C MAM3Q12296 706 aa6.76□□□□□ -1.33
RPL40BYKR094C CLB5P30283 435 aa6.75□□□□□ -1.33
RPL40BYKR094C MET22P32179 357 aa6.74□□□□□ -1.33
RPL40BYKR094C IES2P40154 320 aa6.74□□□□□ -1.33
RPL40BYKR094C PUS5Q06244 254 aa6.74□□□□□ -1.33
RPL40BYKR094C MET32Q12041 191 aa6.74□□□□□ -1.33
RPL40BYKR094C ASH1P34233 588 aa6.71□□□□□ -1.34
RPL40BYKR094C RTF1P53064 558 aa6.71□□□□□ -1.34
RPL40BYKR094C YNL115CP53925 644 aa6.71□□□□□ -1.34
RPL40BYKR094C DSF2P38213 736 aa6.7□□□□□ -1.34
RPL40BYKR094C ENV9Q08651 330 aa6.7□□□□□ -1.34
RPL40BYKR094C SIT4P20604 311 aa6.68□□□□□ -1.34
RPL40BYKR094C AFT1P22149 690 aa6.68□□□□□ -1.34
RPL40BYKR094C NUP42P49686 430 aaKnown RBP6.68□□□□□ -1.34
RPL40BYKR094C TEA1P47988 759 aa6.67□□□□□ -1.34
RPL40BYKR094C NIS1P53939 407 aa6.67□□□□□ -1.34
RPL40BYKR094C YDR444WQ04093 687 aa6.67□□□□□ -1.34
RPL40BYKR094C HST3P53687 447 aa6.66□□□□□ -1.34
RPL40BYKR094C SAS10Q12136 610 aaPredicted RBP6.65□□□□□ -1.34
RPL40BYKR094C KXD1P53158 218 aa6.63□□□□□ -1.35
RPL40BYKR094C DIT2P21595 489 aa6.62□□□□□ -1.35
RPL40BYKR094C DMA1P38823 416 aa6.62□□□□□ -1.35
RPL40BYKR094C RRD1P40454 393 aaKnown RBP6.61□□□□□ -1.35
RPL40BYKR094C LCB5Q06147 687 aaKnown RBP6.61□□□□□ -1.35
RPL40BYKR094C TPD3P31383 635 aa6.6□□□□□ -1.35
RPL40BYKR094C HXT10P43581 546 aa6.6□□□□□ -1.35
RPL40BYKR094C YJR115WP47152 169 aa6.6□□□□□ -1.35
RPL40BYKR094C PDC1P06169 563 aaKnown RBP6.59□□□□□ -1.35
RPL40BYKR094C SLY41P22215 453 aa6.59□□□□□ -1.35
RPL40BYKR094C FPK1P53739 893 aa6.59□□□□□ -1.35
RPL40BYKR094C SPB4P25808 606 aaPredicted RBP6.58□□□□□ -1.36
RPL40BYKR094C YDL176WQ12027 708 aa6.58□□□□□ -1.36
RPL40BYKR094C SYH1Q02875 849 aaKnown RBP6.57□□□□□ -1.36
RPL40BYKR094C YMR196WQ04336 1088 aa6.57□□□□□ -1.36
RPL40BYKR094C MSB3P48566 633 aaPredicted RBP6.55□□□□□ -1.36
RPL40BYKR094C YDL206WQ12424 762 aa6.54□□□□□ -1.36
RPL40BYKR094C SCJ1P25303 377 aa6.53□□□□□ -1.36
RPL40BYKR094C TBF1Q02457 562 aa6.53□□□□□ -1.36
RPL40BYKR094C RPA14P50106 137 aa6.51□□□□□ -1.37
RPL40BYKR094C PUS6P53294 404 aa6.51□□□□□ -1.37
RPL40BYKR094C ALR1Q08269 859 aa6.51□□□□□ -1.37
RPL40BYKR094C UGA3P26370 528 aa6.5□□□□□ -1.37
RPL40BYKR094C KIP2P28743 706 aa6.5□□□□□ -1.37
RPL40BYKR094C TRM1P15565 570 aaKnown RBP6.49□□□□□ -1.37
RPL40BYKR094C YPR097WQ06839 1073 aa6.49□□□□□ -1.37
RPL40BYKR094C PTK2P47116 818 aaKnown RBP6.48□□□□□ -1.37
RPL40BYKR094C HST2P53686 357 aa6.48□□□□□ -1.37
RPL40BYKR094C IXR1P33417 597 aa6.47□□□□□ -1.37
RPL40BYKR094C CAF120P53836 1060 aa6.47□□□□□ -1.37
RPL40BYKR094C OPT2Q06593 877 aa6.45□□□□□ -1.38
RPL40BYKR094C MMP1Q12372 583 aa6.45□□□□□ -1.38
RPL40BYKR094C SRF1Q12516 437 aa6.45□□□□□ -1.38
RPL40BYKR094C MRT4P33201 236 aaKnown RBP6.44□□□□□ -1.38
RPL40BYKR094C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
RPL40BYKR094C ESS1P22696 170 aa6.42□□□□□ -1.38
RPL40BYKR094C ACO2P39533 789 aa6.42□□□□□ -1.38
RPL40BYKR094C GLN1P32288 370 aaKnown RBP6.41□□□□□ -1.38
RPL40BYKR094C ATF2P53296 535 aa6.41□□□□□ -1.38
RPL40BYKR094C YJU3P28321 313 aa6.4□□□□□ -1.38
RPL40BYKR094C YLR346CQ06139 101 aa6.4□□□□□ -1.38
RPL40BYKR094C TYW1Q08960 810 aaKnown RBP6.4□□□□□ -1.38
RPL40BYKR094C GLC3P32775 704 aa6.38□□□□□ -1.39
RPL40BYKR094C NUP85P46673 744 aa6.38□□□□□ -1.39
RPL40BYKR094C VAC17P25591 423 aa6.37□□□□□ -1.39
RPL40BYKR094C GLY1P37303 387 aaKnown RBP6.37□□□□□ -1.39
RPL40BYKR094C ITT1Q04638 464 aa6.37□□□□□ -1.39
RPL40BYKR094C YIR007WP40566 764 aa6.36□□□□□ -1.39
RPL40BYKR094C MIP1P15801 1254 aa6.35□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms