RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeastyeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPL40BYKR094C MTC1P47018 478 aaKnown RBP13.72□□□□□ -0.21
RPL40BYKR094C FAP1P53971 965 aa12.79□□□□□ -0.36
RPL40BYKR094C DRS1P32892 752 aaKnown RBP12.46□□□□□ -0.41
RPL40BYKR094C PRY3P47033 881 aa12.04□□□□□ -0.48
RPL40BYKR094C PRI1P10363 409 aa11.77□□□□□ -0.53
RPL40BYKR094C AAD16Q02895 342 aa11.73□□□□□ -0.53
RPL40BYKR094C ISW2Q08773 1120 aa11.44□□□□□ -0.58
RPL40BYKR094C YCK3P39962 524 aa11.37□□□□□ -0.59
RPL40BYKR094C RPG1P38249 964 aaKnown RBP11.35□□□□□ -0.59
RPL40BYKR094C HAA1Q12753 694 aaKnown RBP11.22□□□□□ -0.61
RPL40BYKR094C TSR3Q12094 313 aaKnown RBP11.14□□□□□ -0.63
RPL40BYKR094C DIP2Q12220 943 aaPredicted RBP11.04□□□□□ -0.64
RPL40BYKR094C RSE1Q04693 1361 aaKnown RBP10.77□□□□□ -0.68
RPL40BYKR094C MRPL32P25348 183 aa10.66□□□□□ -0.7
RPL40BYKR094C AVT3P36062 692 aa10.54□□□□□ -0.72
RPL40BYKR094C RPL17AP05740 184 aaKnown RBP10.48□□□□□ -0.73
RPL40BYKR094C RPL17BP46990 184 aaKnown RBP10.48□□□□□ -0.73
RPL40BYKR094C REB1P21538 810 aa10.46□□□□□ -0.73
RPL40BYKR094C YGL015CP33199 130 aa10.31□□□□□ -0.76
RPL40BYKR094C BFR2Q06631 534 aaKnown RBP10.17□□□□□ -0.78
RPL40BYKR094C CDC27P38042 758 aa10.1□□□□□ -0.79
RPL40BYKR094C SPT21P35209 758 aa10□□□□□ -0.81
RPL40BYKR094C YKR023WP36119 530 aaKnown RBP9.97□□□□□ -0.81
RPL40BYKR094C UBP10P53874 792 aaPredicted RBP9.83□□□□□ -0.84
RPL40BYKR094C MAP2P38174 421 aaKnown RBP9.82□□□□□ -0.84
RPL40BYKR094C DCD1P06773 312 aa9.78□□□□□ -0.84
RPL40BYKR094C HOP09932 586 aa9.78□□□□□ -0.84
RPL40BYKR094C TFC8Q12308 588 aa9.76□□□□□ -0.85
RPL40BYKR094C BUD31P25337 157 aaPredicted RBP9.63□□□□□ -0.87
RPL40BYKR094C SCY1P53009 804 aa9.56□□□□□ -0.88
RPL40BYKR094C RIM101P33400 625 aa9.55□□□□□ -0.88
RPL40BYKR094C SLX5P32828 619 aaKnown RBP9.44□□□□□ -0.9
RPL40BYKR094C BCH2P36122 765 aa9.43□□□□□ -0.9
RPL40BYKR094C TIF4632P39936 914 aaKnown RBP9.41□□□□□ -0.9
RPL40BYKR094C TGL3P40308 642 aa9.37□□□□□ -0.91
RPL40BYKR094C OXP1P28273 1286 aa9.23□□□□□ -0.93
RPL40BYKR094C UBP9P39967 754 aa9.19□□□□□ -0.94
RPL40BYKR094C EPS1P40557 701 aa9.17□□□□□ -0.94
RPL40BYKR094C SIS1P25294 352 aaKnown RBP9.14□□□□□ -0.95
RPL40BYKR094C BDF1P35817 686 aa9.14□□□□□ -0.95
RPL40BYKR094C PTP3P40048 928 aa9.11□□□□□ -0.95
RPL40BYKR094C YIL055CP40523 627 aaKnown RBP9.07□□□□□ -0.96
RPL40BYKR094C RSM7P47150 247 aa8.95□□□□□ -0.98
RPL40BYKR094C MST1P07236 462 aa8.93□□□□□ -0.98
RPL40BYKR094C YAH1Q12184 172 aaKnown RBP8.93□□□□□ -0.98
RPL40BYKR094C BBC1P47068 1157 aa8.92□□□□□ -0.98
RPL40BYKR094C AI2P03876 854 aa8.91□□□□□ -0.98
RPL40BYKR094C YOR238WQ08634 303 aa8.9□□□□□ -0.98
RPL40BYKR094C YBL029C-AQ3E756 94 aa8.9□□□□□ -0.98
RPL40BYKR094C NSR1P27476 414 aaKnown RBP RIP-Chip data8.84□□□□□ -0.99not detected
RPL40BYKR094C YAP5P40574 245 aa8.79□□□□□ -1
RPL40BYKR094C VNX1P42839 908 aa8.76□□□□□ -1.01
RPL40BYKR094C YLR271WQ06152 274 aa8.74□□□□□ -1.01
RPL40BYKR094C TFA1P36100 482 aa8.71□□□□□ -1.02
RPL40BYKR094C WSC3Q12215 556 aa8.71□□□□□ -1.02
RPL40BYKR094C SPP1Q03012 353 aa8.68□□□□□ -1.02
RPL40BYKR094C PSD2P53037 1138 aaKnown RBP8.65□□□□□ -1.02
RPL40BYKR094C GTT3P39996 337 aa8.62□□□□□ -1.03
RPL40BYKR094C PIB1Q06651 286 aa8.59□□□□□ -1.03
RPL40BYKR094C MRM1P25270 412 aa8.58□□□□□ -1.04
RPL40BYKR094C TIF11P38912 153 aaKnown RBP8.57□□□□□ -1.04
RPL40BYKR094C SSP1P38871 571 aa8.53□□□□□ -1.04
RPL40BYKR094C AIR2Q12476 344 aaKnown RBP8.52□□□□□ -1.05
RPL40BYKR094C FKH1P40466 484 aa8.51□□□□□ -1.05
RPL40BYKR094C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.49□□□□□ -1.05not detected
RPL40BYKR094C LDB19Q12502 818 aa8.47□□□□□ -1.05
RPL40BYKR094C ULI1P43604 169 aa8.45□□□□□ -1.06
RPL40BYKR094C YJL171CP46992 396 aa8.44□□□□□ -1.06
RPL40BYKR094C CST9Q06032 482 aa8.43□□□□□ -1.06
RPL40BYKR094C IOC2Q12072 812 aa8.43□□□□□ -1.06
RPL40BYKR094C VPS29P38759 282 aa8.38□□□□□ -1.07
RPL40BYKR094C YMR1P47147 688 aaKnown RBP RIP-Chip data8.37□□□□□ -1.07not detected
RPL40BYKR094C MSB4Q12317 492 aa8.37□□□□□ -1.07
RPL40BYKR094C DBP1P24784 617 aaKnown RBP8.36□□□□□ -1.07
RPL40BYKR094C YFR006WP43590 535 aa8.36□□□□□ -1.07
RPL40BYKR094C YOL036WQ08206 761 aa8.36□□□□□ -1.07
RPL40BYKR094C MGA2P40578 1113 aa8.35□□□□□ -1.07
RPL40BYKR094C SET4P42948 560 aa8.35□□□□□ -1.07
RPL40BYKR094C RTG3P38165 486 aa8.34□□□□□ -1.07
RPL40BYKR094C EAP1P36041 632 aaKnown RBP8.32□□□□□ -1.08
RPL40BYKR094C STS1P38637 319 aa8.31□□□□□ -1.08
RPL40BYKR094C BMT6Q12291 365 aa8.31□□□□□ -1.08
RPL40BYKR094C TRP5P00931 707 aaKnown RBP8.3□□□□□ -1.08
RPL40BYKR094C VMA1P17255 1071 aaKnown RBP8.29□□□□□ -1.08
RPL40BYKR094C RTG1P32607 177 aa8.28□□□□□ -1.08
RPL40BYKR094C RCR1P38212 213 aa8.28□□□□□ -1.08
RPL40BYKR094C SAM3Q08986 587 aa8.23□□□□□ -1.09
RPL40BYKR094C NCR1Q12200 1170 aa8.21□□□□□ -1.1
RPL40BYKR094C YNL035CP53962 389 aaKnown RBP8.2□□□□□ -1.1
RPL40BYKR094C SEC61P32915 480 aa8.16□□□□□ -1.1
RPL40BYKR094C GYP5Q12344 894 aa8.11□□□□□ -1.11
RPL40BYKR094C DAN4P47179 1161 aa8.08□□□□□ -1.12
RPL40BYKR094C ABP1P15891 592 aaKnown RBP8.07□□□□□ -1.12
RPL40BYKR094C DCW1P36091 449 aa8.07□□□□□ -1.12
RPL40BYKR094C TFG1P41895 735 aaPredicted RBP8.07□□□□□ -1.12
RPL40BYKR094C HTA1P04911 132 aaKnown RBP8.06□□□□□ -1.12
RPL40BYKR094C HTA2P04912 132 aa8.06□□□□□ -1.12
RPL40BYKR094C JIP4Q03361 876 aa8.06□□□□□ -1.12
RPL40BYKR094C SAP30P38429 201 aa8.05□□□□□ -1.12
RPL40BYKR094C YEL023CP39992 682 aa8.01□□□□□ -1.13
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms