RNA–Protein interactions for RNA: YAL004W

YAL004W, Transcript of Dubious open reading frame, yeast

Gene YAL004W, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YAL004W	YAL004W	TFB4	Q12004	338 aa		6.04	□□□□□ -1.44
YAL004W	YAL004W	GAR1	P28007	205 aa	Known RBP	6.03	□□□□□ -1.44
YAL004W	YAL004W	GCR2	Q01722	534 aa		6.03	□□□□□ -1.44
YAL004W	YAL004W	CSC1	Q06538	782 aa		6.03	□□□□□ -1.44
YAL004W	YAL004W	PEX21	P50091	288 aa		6	□□□□□ -1.45
YAL004W	YAL004W	TUM1	Q08686	304 aa	Known RBP	6	□□□□□ -1.45
YAL004W	YAL004W	CDC4	P07834	779 aa		5.99	□□□□□ -1.45
YAL004W	YAL004W	MET22	P32179	357 aa		5.98	□□□□□ -1.45
YAL004W	YAL004W	ORC6	P38826	435 aa		5.98	□□□□□ -1.45
YAL004W	YAL004W	ENV9	Q08651	330 aa		5.96	□□□□□ -1.46
YAL004W	YAL004W	KIC1	P38692	1080 aa		5.95	□□□□□ -1.46
YAL004W	YAL004W	BDP1	P46678	594 aa		5.95	□□□□□ -1.46
YAL004W	YAL004W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.94	□□□□□ -1.46	not detected
YAL004W	YAL004W	GCD11	P32481	527 aa	Known RBP	5.94	□□□□□ -1.46
YAL004W	YAL004W	FRK1	Q03002	865 aa	Predicted RBP	5.94	□□□□□ -1.46
YAL004W	YAL004W	SPT16	P32558	1035 aa	Known RBP	5.93	□□□□□ -1.46
YAL004W	YAL004W	NPL4	P33755	580 aa		5.92	□□□□□ -1.46
YAL004W	YAL004W	HED1	Q03937	162 aa		5.92	□□□□□ -1.46
YAL004W	YAL004W	SGS1	P35187	1447 aa		5.91	□□□□□ -1.46
YAL004W	YAL004W	YDL176W	Q12027	708 aa		5.91	□□□□□ -1.46
YAL004W	YAL004W	MVP1	P40959	511 aa	Known RBP	5.9	□□□□□ -1.46
YAL004W	YAL004W	RRN7	P40992	514 aa		5.9	□□□□□ -1.46
YAL004W	YAL004W	IFH1	P39520	1085 aa		5.89	□□□□□ -1.47
YAL004W	YAL004W	REF2	P42073	533 aa	Predicted RBP	5.89	□□□□□ -1.47
YAL004W	YAL004W	YPR148C	Q06523	435 aa		5.89	□□□□□ -1.47
YAL004W	YAL004W	YDR444W	Q04093	687 aa		5.88	□□□□□ -1.47
YAL004W	YAL004W	MET32	Q12041	191 aa		5.86	□□□□□ -1.47
YAL004W	YAL004W	LCB5	Q06147	687 aa	Known RBP	5.85	□□□□□ -1.47
YAL004W	YAL004W	MOD5	P07884	428 aa		5.84	□□□□□ -1.47
YAL004W	YAL004W	RGR1	P19263	1082 aa		5.84	□□□□□ -1.47
YAL004W	YAL004W	YPR109W	Q06104	294 aa		5.84	□□□□□ -1.47
YAL004W	YAL004W	ERF2	Q06551	359 aa		5.83	□□□□□ -1.48
YAL004W	YAL004W	AFT1	P22149	690 aa		5.82	□□□□□ -1.48
YAL004W	YAL004W	COX6	P00427	148 aa		5.81	□□□□□ -1.48
YAL004W	YAL004W	PAT1	P25644	796 aa	Known RBP	5.81	□□□□□ -1.48
YAL004W	YAL004W	ASH1	P34233	588 aa		5.81	□□□□□ -1.48
YAL004W	YAL004W	INO80	P53115	1489 aa		5.8	□□□□□ -1.48
YAL004W	YAL004W	PAC1	P39946	494 aa	Known RBP	5.8	□□□□□ -1.48
YAL004W	YAL004W	MAK21	Q12176	1025 aa	Known RBP	5.8	□□□□□ -1.48
YAL004W	YAL004W	KEX2	P13134	814 aa		5.79	□□□□□ -1.48
YAL004W	YAL004W	AGE1	Q04412	482 aa		5.79	□□□□□ -1.48
YAL004W	YAL004W	RRD1	P40454	393 aa	Known RBP	5.77	□□□□□ -1.49
YAL004W	YAL004W	YJR115W	P47152	169 aa		5.73	□□□□□ -1.49
YAL004W	YAL004W	HST3	P53687	447 aa		5.73	□□□□□ -1.49
YAL004W	YAL004W	PUS5	Q06244	254 aa		5.73	□□□□□ -1.49
YAL004W	YAL004W	TUB4	P53378	473 aa		5.71	□□□□□ -1.5
YAL004W	YAL004W	LEU3	P08638	886 aa		5.7	□□□□□ -1.5
YAL004W	YAL004W	VPS70	P47161	811 aa		5.69	□□□□□ -1.5
YAL004W	YAL004W	ACO2	P39533	789 aa		5.68	□□□□□ -1.5
YAL004W	YAL004W	MSB3	P48566	633 aa	Predicted RBP	5.67	□□□□□ -1.5
YAL004W	YAL004W	TCB3	Q03640	1545 aa	Known RBP	5.66	□□□□□ -1.5
YAL004W	YAL004W	TPD3	P31383	635 aa		5.66	□□□□□ -1.5
YAL004W	YAL004W	RTF1	P53064	558 aa		5.66	□□□□□ -1.5
YAL004W	YAL004W	MTC5	Q03897	1148 aa		5.65	□□□□□ -1.5
YAL004W	YAL004W	SPA2	P23201	1466 aa	Known RBP	5.64	□□□□□ -1.51
YAL004W	YAL004W	PSE1	P32337	1089 aa	Known RBP	5.64	□□□□□ -1.51
YAL004W	YAL004W	CAF120	P53836	1060 aa		5.64	□□□□□ -1.51
YAL004W	YAL004W	SSN2	P38931	1420 aa		5.64	□□□□□ -1.51
YAL004W	YAL004W	SIT4	P20604	311 aa		5.62	□□□□□ -1.51
YAL004W	YAL004W	CLB5	P30283	435 aa		5.61	□□□□□ -1.51
YAL004W	YAL004W	YNL115C	P53925	644 aa		5.61	□□□□□ -1.51
YAL004W	YAL004W	OPT2	Q06593	877 aa		5.61	□□□□□ -1.51
YAL004W	YAL004W	TRK2	P28584	889 aa		5.58	□□□□□ -1.52
YAL004W	YAL004W	HXT10	P43581	546 aa		5.58	□□□□□ -1.52
YAL004W	YAL004W	PTK2	P47116	818 aa	Known RBP	5.58	□□□□□ -1.52
YAL004W	YAL004W	PDC1	P06169	563 aa	Known RBP	5.57	□□□□□ -1.52
YAL004W	YAL004W	KXD1	P53158	218 aa		5.57	□□□□□ -1.52
YAL004W	YAL004W	DMA2	P53924	522 aa		5.57	□□□□□ -1.52
YAL004W	YAL004W	SYH1	Q02875	849 aa	Known RBP	5.57	□□□□□ -1.52
YAL004W	YAL004W	GLY1	P37303	387 aa	Known RBP	5.56	□□□□□ -1.52
YAL004W	YAL004W	YIR007W	P40566	764 aa		5.55	□□□□□ -1.52
YAL004W	YAL004W	SAS10	Q12136	610 aa	Predicted RBP	5.55	□□□□□ -1.52
YAL004W	YAL004W	PBS2	P08018	668 aa		5.54	□□□□□ -1.52
YAL004W	YAL004W	YGR035C	P53222	116 aa		5.54	□□□□□ -1.52
YAL004W	YAL004W	HPF1	Q05164	967 aa		5.54	□□□□□ -1.52
YAL004W	YAL004W	UGA3	P26370	528 aa		5.53	□□□□□ -1.52
YAL004W	YAL004W	MRT4	P33201	236 aa	Known RBP	5.53	□□□□□ -1.52
YAL004W	YAL004W	TY1A-BL	Q12266	440 aa		5.52	□□□□□ -1.53
YAL004W	YAL004W	AIM44	Q99299	758 aa		5.52	□□□□□ -1.53
YAL004W	YAL004W	NUP85	P46673	744 aa		5.51	□□□□□ -1.53
YAL004W	YAL004W	NIS1	P53939	407 aa		5.51	□□□□□ -1.53
YAL004W	YAL004W	YLR346C	Q06139	101 aa		5.51	□□□□□ -1.53
YAL004W	YAL004W	RLF2	Q12495	606 aa		5.49	□□□□□ -1.53
YAL004W	YAL004W	RPN1	P38764	993 aa	Known RBP	5.48	□□□□□ -1.53
YAL004W	YAL004W	SCW11	P53189	542 aa		5.48	□□□□□ -1.53
YAL004W	YAL004W	SRF1	Q12516	437 aa		5.48	□□□□□ -1.53
YAL004W	YAL004W	CKB1	P43639	278 aa		5.47	□□□□□ -1.53
YAL004W	YAL004W	TY1B-DR4	Q07793	1604 aa		5.46	□□□□□ -1.54
YAL004W	YAL004W	MIP1	P15801	1254 aa		5.46	□□□□□ -1.54
YAL004W	YAL004W	TEA1	P47988	759 aa		5.46	□□□□□ -1.54
YAL004W	YAL004W	RPA14	P50106	137 aa		5.46	□□□□□ -1.54
YAL004W	YAL004W	YPR097W	Q06839	1073 aa		5.46	□□□□□ -1.54
YAL004W	YAL004W	TYW1	Q08960	810 aa	Known RBP	5.46	□□□□□ -1.54
YAL004W	YAL004W	MON2	P48563	1636 aa	Predicted RBP	5.45	□□□□□ -1.54
YAL004W	YAL004W	RTT106	P40161	455 aa		5.45	□□□□□ -1.54
YAL004W	YAL004W	MAM3	Q12296	706 aa		5.45	□□□□□ -1.54
YAL004W	YAL004W	NUP42	P49686	430 aa	Known RBP	5.44	□□□□□ -1.54
YAL004W	YAL004W	ALR1	Q08269	859 aa		5.44	□□□□□ -1.54
YAL004W	YAL004W	YDL206W	Q12424	762 aa		5.44	□□□□□ -1.54
YAL004W	YAL004W	SLY41	P22215	453 aa		5.43	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 29 ms