Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
PCDH9Q9HC56 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.48■■■■□ 3.11
PCDH9Q9HC56 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.05■■■■□ 3.04
PCDH9Q9HC56 AL356512.1-201ENST00000607453 1739 ntBASIC33.9■■■■□ 3.02
PCDH9Q9HC56 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.9■■■■□ 3.02
PCDH9Q9HC56 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.68■■■□□ 2.98
PCDH9Q9HC56 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.56■■■□□ 2.96
PCDH9Q9HC56 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.51■■■□□ 2.95
PCDH9Q9HC56 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.93
PCDH9Q9HC56 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
PCDH9Q9HC56 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.17■■■□□ 2.9
PCDH9Q9HC56 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.03■■■□□ 2.88
PCDH9Q9HC56 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.91■■■□□ 2.86
PCDH9Q9HC56 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
PCDH9Q9HC56 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.63■■■□□ 2.81
PCDH9Q9HC56 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.54■■■□□ 2.8
PCDH9Q9HC56 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
PCDH9Q9HC56 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.37■■■□□ 2.77
PCDH9Q9HC56 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
PCDH9Q9HC56 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
PCDH9Q9HC56 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
PCDH9Q9HC56 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.26■■■□□ 2.75
PCDH9Q9HC56 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.17■■■□□ 2.74
PCDH9Q9HC56 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.06■■■□□ 2.72
PCDH9Q9HC56 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.7
PCDH9Q9HC56 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.93■■■□□ 2.7
PCDH9Q9HC56 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
PCDH9Q9HC56 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
PCDH9Q9HC56 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
PCDH9Q9HC56 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
PCDH9Q9HC56 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
PCDH9Q9HC56 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
PCDH9Q9HC56 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.73■■■□□ 2.67
PCDH9Q9HC56 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.62■■■□□ 2.65
PCDH9Q9HC56 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
PCDH9Q9HC56 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
PCDH9Q9HC56 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
PCDH9Q9HC56 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.53■■■□□ 2.64
PCDH9Q9HC56 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.48■■■□□ 2.63
PCDH9Q9HC56 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.38■■■□□ 2.61
PCDH9Q9HC56 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
PCDH9Q9HC56 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
PCDH9Q9HC56 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.15■■■□□ 2.58
PCDH9Q9HC56 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
PCDH9Q9HC56 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
PCDH9Q9HC56 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCDH9Q9HC56 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
PCDH9Q9HC56 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
PCDH9Q9HC56 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
PCDH9Q9HC56 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.81■■■□□ 2.52
PCDH9Q9HC56 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
PCDH9Q9HC56 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
PCDH9Q9HC56 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
PCDH9Q9HC56 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
PCDH9Q9HC56 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.76■■■□□ 2.52
PCDH9Q9HC56 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
PCDH9Q9HC56 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.74■■■□□ 2.51
PCDH9Q9HC56 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
PCDH9Q9HC56 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
PCDH9Q9HC56 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
PCDH9Q9HC56 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.66■■■□□ 2.5
PCDH9Q9HC56 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.61■■■□□ 2.49
PCDH9Q9HC56 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
PCDH9Q9HC56 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
PCDH9Q9HC56 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.53■■■□□ 2.48
PCDH9Q9HC56 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
PCDH9Q9HC56 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
PCDH9Q9HC56 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.46
PCDH9Q9HC56 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
PCDH9Q9HC56 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
PCDH9Q9HC56 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
PCDH9Q9HC56 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
PCDH9Q9HC56 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
PCDH9Q9HC56 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
PCDH9Q9HC56 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.23■■■□□ 2.43
PCDH9Q9HC56 AC015813.7-201ENST00000623294 581 ntBASIC30.21■■■□□ 2.43
PCDH9Q9HC56 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
PCDH9Q9HC56 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
PCDH9Q9HC56 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
PCDH9Q9HC56 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
PCDH9Q9HC56 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
PCDH9Q9HC56 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
PCDH9Q9HC56 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30■■■□□ 2.39
PCDH9Q9HC56 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.95■■■□□ 2.38
PCDH9Q9HC56 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
PCDH9Q9HC56 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
PCDH9Q9HC56 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.93■■■□□ 2.38
PCDH9Q9HC56 AC145285.7-201ENST00000614819 1539 ntBASIC29.91■■■□□ 2.38
PCDH9Q9HC56 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
PCDH9Q9HC56 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
PCDH9Q9HC56 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
PCDH9Q9HC56 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PCDH9Q9HC56 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.86■■■□□ 2.37
PCDH9Q9HC56 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
PCDH9Q9HC56 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
PCDH9Q9HC56 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.84■■■□□ 2.37
PCDH9Q9HC56 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCDH9Q9HC56 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
PCDH9Q9HC56 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCDH9Q9HC56 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 226.8 ms