Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.58■■■■□ 3.13
ECHDC3Q96DC8 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
ECHDC3Q96DC8 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.57■■■□□ 2.96
ECHDC3Q96DC8 AL356512.1-201ENST00000607453 1739 ntBASIC33.56■■■□□ 2.96
ECHDC3Q96DC8 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
ECHDC3Q96DC8 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
ECHDC3Q96DC8 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.36■■■□□ 2.93
ECHDC3Q96DC8 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.97■■■□□ 2.87
ECHDC3Q96DC8 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.71■■■□□ 2.83
ECHDC3Q96DC8 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.67■■■□□ 2.82
ECHDC3Q96DC8 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.65■■■□□ 2.82
ECHDC3Q96DC8 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.38■■■□□ 2.77
ECHDC3Q96DC8 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.3■■■□□ 2.76
ECHDC3Q96DC8 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.27■■■□□ 2.76
ECHDC3Q96DC8 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
ECHDC3Q96DC8 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.12■■■□□ 2.73
ECHDC3Q96DC8 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
ECHDC3Q96DC8 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.94■■■□□ 2.7
ECHDC3Q96DC8 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
ECHDC3Q96DC8 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.77■■■□□ 2.68
ECHDC3Q96DC8 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
ECHDC3Q96DC8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
ECHDC3Q96DC8 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
ECHDC3Q96DC8 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
ECHDC3Q96DC8 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
ECHDC3Q96DC8 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
ECHDC3Q96DC8 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
ECHDC3Q96DC8 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
ECHDC3Q96DC8 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.02■■■□□ 2.56
ECHDC3Q96DC8 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
ECHDC3Q96DC8 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
ECHDC3Q96DC8 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.95■■■□□ 2.55
ECHDC3Q96DC8 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ECHDC3Q96DC8 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.86■■■□□ 2.53
ECHDC3Q96DC8 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.83■■■□□ 2.53
ECHDC3Q96DC8 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
ECHDC3Q96DC8 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.76■■■□□ 2.51
ECHDC3Q96DC8 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
ECHDC3Q96DC8 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
ECHDC3Q96DC8 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
ECHDC3Q96DC8 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
ECHDC3Q96DC8 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.64■■■□□ 2.5
ECHDC3Q96DC8 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
ECHDC3Q96DC8 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.57■■■□□ 2.48
ECHDC3Q96DC8 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
ECHDC3Q96DC8 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
ECHDC3Q96DC8 AC015813.7-201ENST00000623294 581 ntBASIC30.44■■■□□ 2.46
ECHDC3Q96DC8 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
ECHDC3Q96DC8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
ECHDC3Q96DC8 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ECHDC3Q96DC8 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
ECHDC3Q96DC8 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.2■■■□□ 2.43
ECHDC3Q96DC8 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
ECHDC3Q96DC8 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.15■■■□□ 2.42
ECHDC3Q96DC8 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.14■■■□□ 2.42
ECHDC3Q96DC8 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
ECHDC3Q96DC8 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.07■■■□□ 2.4
ECHDC3Q96DC8 AC006077.2-201ENST00000623591 457 ntBASIC30.05■■■□□ 2.4
ECHDC3Q96DC8 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
ECHDC3Q96DC8 ZNRF2P1-201ENST00000441407 443 ntBASIC29.92■■■□□ 2.38
ECHDC3Q96DC8 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
ECHDC3Q96DC8 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
ECHDC3Q96DC8 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.88■■■□□ 2.37
ECHDC3Q96DC8 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
ECHDC3Q96DC8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
ECHDC3Q96DC8 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
ECHDC3Q96DC8 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
ECHDC3Q96DC8 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
ECHDC3Q96DC8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
ECHDC3Q96DC8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
ECHDC3Q96DC8 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
ECHDC3Q96DC8 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
ECHDC3Q96DC8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
ECHDC3Q96DC8 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
ECHDC3Q96DC8 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
ECHDC3Q96DC8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
ECHDC3Q96DC8 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
ECHDC3Q96DC8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
ECHDC3Q96DC8 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.45■■■□□ 2.31
ECHDC3Q96DC8 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
ECHDC3Q96DC8 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
ECHDC3Q96DC8 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
ECHDC3Q96DC8 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
ECHDC3Q96DC8 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
ECHDC3Q96DC8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.38■■■□□ 2.29
ECHDC3Q96DC8 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
ECHDC3Q96DC8 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.38■■■□□ 2.29
ECHDC3Q96DC8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
ECHDC3Q96DC8 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.29■■■□□ 2.28
ECHDC3Q96DC8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
ECHDC3Q96DC8 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
ECHDC3Q96DC8 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.26■■■□□ 2.27
ECHDC3Q96DC8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.25■■■□□ 2.27
ECHDC3Q96DC8 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
ECHDC3Q96DC8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.24■■■□□ 2.27
ECHDC3Q96DC8 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.2■■■□□ 2.26
ECHDC3Q96DC8 AP002365.1-201ENST00000603448 772 ntBASIC29.19■■■□□ 2.26
ECHDC3Q96DC8 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
ECHDC3Q96DC8 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
ECHDC3Q96DC8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms