Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC23.91■■□□□ 1.42
ALMS1Q8TCU4 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
ALMS1Q8TCU4 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
ALMS1Q8TCU4 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
ALMS1Q8TCU4 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
ALMS1Q8TCU4 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
ALMS1Q8TCU4 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
ALMS1Q8TCU4 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
ALMS1Q8TCU4 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
ALMS1Q8TCU4 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC22.85■■□□□ 1.25
ALMS1Q8TCU4 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
ALMS1Q8TCU4 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC22.77■■□□□ 1.24
ALMS1Q8TCU4 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
ALMS1Q8TCU4 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC22.63■■□□□ 1.21
ALMS1Q8TCU4 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
ALMS1Q8TCU4 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
ALMS1Q8TCU4 AL356512.1-201ENST00000607453 1739 ntBASIC22.48■■□□□ 1.19
ALMS1Q8TCU4 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
ALMS1Q8TCU4 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
ALMS1Q8TCU4 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
ALMS1Q8TCU4 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ALMS1Q8TCU4 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ALMS1Q8TCU4 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ALMS1Q8TCU4 ZNRF2P1-201ENST00000441407 443 ntBASIC22.07■■□□□ 1.12
ALMS1Q8TCU4 INO80B-203ENST00000409917 796 ntTSL 2 BASIC22.06■■□□□ 1.12
ALMS1Q8TCU4 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
ALMS1Q8TCU4 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC22.02■■□□□ 1.12
ALMS1Q8TCU4 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
ALMS1Q8TCU4 AC006077.2-201ENST00000623591 457 ntBASIC21.96■■□□□ 1.11
ALMS1Q8TCU4 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
ALMS1Q8TCU4 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC21.92■■□□□ 1.1
ALMS1Q8TCU4 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ALMS1Q8TCU4 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ALMS1Q8TCU4 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC21.62■■□□□ 1.05
ALMS1Q8TCU4 AC015813.7-201ENST00000623294 581 ntBASIC21.57■■□□□ 1.04
ALMS1Q8TCU4 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ALMS1Q8TCU4 AP002365.1-201ENST00000603448 772 ntBASIC21.46■■□□□ 1.03
ALMS1Q8TCU4 HES6-203ENST00000409160 1600 ntTSL 2 BASIC21.43■■□□□ 1.02
ALMS1Q8TCU4 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
ALMS1Q8TCU4 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ALMS1Q8TCU4 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC21.39■■□□□ 1.02
ALMS1Q8TCU4 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ALMS1Q8TCU4 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
ALMS1Q8TCU4 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
ALMS1Q8TCU4 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
ALMS1Q8TCU4 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.32■■□□□ 1
ALMS1Q8TCU4 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.32■■□□□ 1
ALMS1Q8TCU4 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC21.29■■□□□ 1
ALMS1Q8TCU4 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.22■□□□□ 0.99
ALMS1Q8TCU4 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC21.21■□□□□ 0.99
ALMS1Q8TCU4 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
ALMS1Q8TCU4 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC21.19■□□□□ 0.98
ALMS1Q8TCU4 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC21.18■□□□□ 0.98
ALMS1Q8TCU4 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
ALMS1Q8TCU4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
ALMS1Q8TCU4 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ALMS1Q8TCU4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ALMS1Q8TCU4 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC21.04■□□□□ 0.96
ALMS1Q8TCU4 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
ALMS1Q8TCU4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
ALMS1Q8TCU4 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.99■□□□□ 0.95
ALMS1Q8TCU4 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ALMS1Q8TCU4 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ALMS1Q8TCU4 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ALMS1Q8TCU4 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.95■□□□□ 0.94
ALMS1Q8TCU4 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ALMS1Q8TCU4 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ALMS1Q8TCU4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.87■□□□□ 0.93
ALMS1Q8TCU4 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ALMS1Q8TCU4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ALMS1Q8TCU4 DYNLL1-208ENST00000550178 581 ntBASIC20.84■□□□□ 0.93
ALMS1Q8TCU4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
ALMS1Q8TCU4 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.82■□□□□ 0.92
ALMS1Q8TCU4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC20.79■□□□□ 0.92
ALMS1Q8TCU4 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ALMS1Q8TCU4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ALMS1Q8TCU4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ALMS1Q8TCU4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.75■□□□□ 0.91
ALMS1Q8TCU4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.73■□□□□ 0.91
ALMS1Q8TCU4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.73■□□□□ 0.91
ALMS1Q8TCU4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ALMS1Q8TCU4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ALMS1Q8TCU4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC20.69■□□□□ 0.9
ALMS1Q8TCU4 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ALMS1Q8TCU4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.67■□□□□ 0.9
ALMS1Q8TCU4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.65■□□□□ 0.9
ALMS1Q8TCU4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.65■□□□□ 0.9
ALMS1Q8TCU4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.64■□□□□ 0.9
ALMS1Q8TCU4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.64■□□□□ 0.89
ALMS1Q8TCU4 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALMS1Q8TCU4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALMS1Q8TCU4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ALMS1Q8TCU4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALMS1Q8TCU4 RARRES2P7-201ENST00000567349 469 ntBASIC20.59■□□□□ 0.89
ALMS1Q8TCU4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALMS1Q8TCU4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.58■□□□□ 0.89
ALMS1Q8TCU4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ALMS1Q8TCU4 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.57■□□□□ 0.88
ALMS1Q8TCU4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
ALMS1Q8TCU4 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms