Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
RNF4P78317 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RNF4P78317 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.9■■■□□ 2.54
RNF4P78317 AL356512.1-201ENST00000607453 1739 ntBASIC30.87■■■□□ 2.53
RNF4P78317 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
RNF4P78317 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
RNF4P78317 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC30.69■■■□□ 2.5
RNF4P78317 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30.3■■■□□ 2.44
RNF4P78317 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC30.1■■■□□ 2.41
RNF4P78317 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC30.06■■■□□ 2.4
RNF4P78317 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC30.03■■■□□ 2.4
RNF4P78317 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.8■■■□□ 2.36
RNF4P78317 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC29.75■■■□□ 2.35
RNF4P78317 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.68■■■□□ 2.34
RNF4P78317 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
RNF4P78317 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.54■■■□□ 2.32
RNF4P78317 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
RNF4P78317 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC29.39■■■□□ 2.3
RNF4P78317 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
RNF4P78317 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.28■■■□□ 2.28
RNF4P78317 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
RNF4P78317 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.91■■■□□ 2.22
RNF4P78317 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
RNF4P78317 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
RNF4P78317 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RNF4P78317 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RNF4P78317 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RNF4P78317 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
RNF4P78317 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
RNF4P78317 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
RNF4P78317 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.54■■■□□ 2.16
RNF4P78317 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RNF4P78317 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.46■■■□□ 2.15
RNF4P78317 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC28.43■■■□□ 2.14
RNF4P78317 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC28.4■■■□□ 2.14
RNF4P78317 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RNF4P78317 INO80B-203ENST00000409917 796 ntTSL 2 BASIC28.33■■■□□ 2.13
RNF4P78317 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
RNF4P78317 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
RNF4P78317 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
RNF4P78317 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RNF4P78317 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC28.21■■■□□ 2.11
RNF4P78317 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
RNF4P78317 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RNF4P78317 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC28.11■■■□□ 2.09
RNF4P78317 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
RNF4P78317 AC015813.7-201ENST00000623294 581 ntBASIC28.02■■■□□ 2.08
RNF4P78317 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.99■■■□□ 2.07
RNF4P78317 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
RNF4P78317 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
RNF4P78317 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
RNF4P78317 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.86■■■□□ 2.05
RNF4P78317 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC27.8■■■□□ 2.04
RNF4P78317 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.79■■■□□ 2.04
RNF4P78317 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
RNF4P78317 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.77■■■□□ 2.04
RNF4P78317 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
RNF4P78317 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC27.7■■■□□ 2.02
RNF4P78317 AC006077.2-201ENST00000623591 457 ntBASIC27.67■■■□□ 2.02
RNF4P78317 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
RNF4P78317 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC27.55■■■□□ 2
RNF4P78317 ZNRF2P1-201ENST00000441407 443 ntBASIC27.54■■■□□ 2
RNF4P78317 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
RNF4P78317 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.49■■□□□ 1.99
RNF4P78317 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RNF4P78317 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
RNF4P78317 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RNF4P78317 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RNF4P78317 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
RNF4P78317 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
RNF4P78317 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF4P78317 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF4P78317 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF4P78317 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF4P78317 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RNF4P78317 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
RNF4P78317 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
RNF4P78317 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
RNF4P78317 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RNF4P78317 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
RNF4P78317 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF4P78317 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC27.09■■□□□ 1.93
RNF4P78317 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RNF4P78317 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
RNF4P78317 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
RNF4P78317 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
RNF4P78317 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC27.03■■□□□ 1.92
RNF4P78317 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC27.02■■□□□ 1.92
RNF4P78317 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF4P78317 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.94■■□□□ 1.9
RNF4P78317 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
RNF4P78317 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.92■■□□□ 1.9
RNF4P78317 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RNF4P78317 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
RNF4P78317 AP002365.1-201ENST00000603448 772 ntBASIC26.89■■□□□ 1.9
RNF4P78317 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.89■■□□□ 1.89
RNF4P78317 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RNF4P78317 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.84■■□□□ 1.89
RNF4P78317 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.88
RNF4P78317 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms