Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.38■■■□□ 2.93
CLDN6P56747 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.04■■■□□ 2.88
CLDN6P56747 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.64■■■□□ 2.82
CLDN6P56747 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CLDN6P56747 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
CLDN6P56747 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
CLDN6P56747 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CLDN6P56747 AL356512.1-201ENST00000607453 1739 ntBASIC31.77■■■□□ 2.68
CLDN6P56747 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.72■■■□□ 2.67
CLDN6P56747 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.59■■■□□ 2.65
CLDN6P56747 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CLDN6P56747 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CLDN6P56747 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.44■■■□□ 2.62
CLDN6P56747 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.42■■■□□ 2.62
CLDN6P56747 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.07■■■□□ 2.56
CLDN6P56747 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
CLDN6P56747 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CLDN6P56747 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.04■■■□□ 2.56
CLDN6P56747 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CLDN6P56747 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CLDN6P56747 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CLDN6P56747 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.7■■■□□ 2.51
CLDN6P56747 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLDN6P56747 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
CLDN6P56747 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.59■■■□□ 2.49
CLDN6P56747 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CLDN6P56747 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
CLDN6P56747 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
CLDN6P56747 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30.43■■■□□ 2.46
CLDN6P56747 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLDN6P56747 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC30.33■■■□□ 2.45
CLDN6P56747 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.18■■■□□ 2.42
CLDN6P56747 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC30.17■■■□□ 2.42
CLDN6P56747 ZNRF2P1-201ENST00000441407 443 ntBASIC30.16■■■□□ 2.42
CLDN6P56747 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
CLDN6P56747 AC006077.2-201ENST00000623591 457 ntBASIC30.1■■■□□ 2.41
CLDN6P56747 AC015813.7-201ENST00000623294 581 ntBASIC29.97■■■□□ 2.39
CLDN6P56747 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.96■■■□□ 2.39
CLDN6P56747 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CLDN6P56747 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CLDN6P56747 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.74■■■□□ 2.35
CLDN6P56747 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
CLDN6P56747 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CLDN6P56747 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
CLDN6P56747 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
CLDN6P56747 AP002365.1-201ENST00000603448 772 ntBASIC29.45■■■□□ 2.31
CLDN6P56747 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.39■■■□□ 2.3
CLDN6P56747 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.3■■■□□ 2.28
CLDN6P56747 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.29■■■□□ 2.28
CLDN6P56747 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.29■■■□□ 2.28
CLDN6P56747 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CLDN6P56747 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.28■■■□□ 2.28
CLDN6P56747 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CLDN6P56747 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.22■■■□□ 2.27
CLDN6P56747 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.2■■■□□ 2.26
CLDN6P56747 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.2■■■□□ 2.26
CLDN6P56747 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CLDN6P56747 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CLDN6P56747 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
CLDN6P56747 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.09■■■□□ 2.25
CLDN6P56747 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.07■■■□□ 2.24
CLDN6P56747 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.04■■■□□ 2.24
CLDN6P56747 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.01■■■□□ 2.23
CLDN6P56747 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.97■■■□□ 2.23
CLDN6P56747 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
CLDN6P56747 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.92■■■□□ 2.22
CLDN6P56747 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC28.9■■■□□ 2.22
CLDN6P56747 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
CLDN6P56747 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
CLDN6P56747 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC28.87■■■□□ 2.21
CLDN6P56747 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
CLDN6P56747 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.85■■■□□ 2.21
CLDN6P56747 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CLDN6P56747 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CLDN6P56747 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CLDN6P56747 DYNLL1-208ENST00000550178 581 ntBASIC28.81■■■□□ 2.2
CLDN6P56747 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CLDN6P56747 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CLDN6P56747 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CLDN6P56747 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
CLDN6P56747 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.71■■■□□ 2.19
CLDN6P56747 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC28.7■■■□□ 2.19
CLDN6P56747 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
CLDN6P56747 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLDN6P56747 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CLDN6P56747 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC28.65■■■□□ 2.18
CLDN6P56747 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CLDN6P56747 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC28.63■■■□□ 2.17
CLDN6P56747 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CLDN6P56747 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
CLDN6P56747 AL031258.1-201ENST00000623562 325 ntBASIC28.55■■■□□ 2.16
CLDN6P56747 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
CLDN6P56747 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.51■■■□□ 2.15
CLDN6P56747 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.49■■■□□ 2.15
CLDN6P56747 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.46■■■□□ 2.15
CLDN6P56747 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.46■■■□□ 2.15
CLDN6P56747 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
CLDN6P56747 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC28.44■■■□□ 2.14
CLDN6P56747 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CLDN6P56747 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms