Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC22.11■■□□□ 1.13
APOBP04114 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
APOBP04114 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
APOBP04114 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOBP04114 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
APOBP04114 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
APOBP04114 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOBP04114 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOBP04114 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
APOBP04114 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
APOBP04114 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC21.06■□□□□ 0.96
APOBP04114 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC20.99■□□□□ 0.95
APOBP04114 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOBP04114 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC20.92■□□□□ 0.94
APOBP04114 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
APOBP04114 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
APOBP04114 AL356512.1-201ENST00000607453 1739 ntBASIC20.82■□□□□ 0.92
APOBP04114 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOBP04114 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOBP04114 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
APOBP04114 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
APOBP04114 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.43■□□□□ 0.86
APOBP04114 ZNRF2P1-201ENST00000441407 443 ntBASIC20.42■□□□□ 0.86
APOBP04114 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOBP04114 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOBP04114 AC006077.2-201ENST00000623591 457 ntBASIC20.33■□□□□ 0.85
APOBP04114 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOBP04114 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
APOBP04114 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
APOBP04114 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.27■□□□□ 0.84
APOBP04114 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOBP04114 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.19■□□□□ 0.82
APOBP04114 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
APOBP04114 AC015813.7-201ENST00000623294 581 ntBASIC19.97■□□□□ 0.79
APOBP04114 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC19.9■□□□□ 0.78
APOBP04114 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.86■□□□□ 0.77
APOBP04114 HES6-203ENST00000409160 1600 ntTSL 2 BASIC19.83■□□□□ 0.77
APOBP04114 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
APOBP04114 AP002365.1-201ENST00000603448 772 ntBASIC19.8■□□□□ 0.76
APOBP04114 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
APOBP04114 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
APOBP04114 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
APOBP04114 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC19.75■□□□□ 0.75
APOBP04114 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
APOBP04114 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOBP04114 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
APOBP04114 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.67■□□□□ 0.74
APOBP04114 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
APOBP04114 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.64■□□□□ 0.73
APOBP04114 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC19.61■□□□□ 0.73
APOBP04114 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOBP04114 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
APOBP04114 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
APOBP04114 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.54■□□□□ 0.72
APOBP04114 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.54■□□□□ 0.72
APOBP04114 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
APOBP04114 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOBP04114 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC19.48■□□□□ 0.71
APOBP04114 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
APOBP04114 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOBP04114 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
APOBP04114 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC19.38■□□□□ 0.69
APOBP04114 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
APOBP04114 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
APOBP04114 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
APOBP04114 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.32■□□□□ 0.68
APOBP04114 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOBP04114 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
APOBP04114 DYNLL1-208ENST00000550178 581 ntBASIC19.26■□□□□ 0.67
APOBP04114 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
APOBP04114 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC19.23■□□□□ 0.67
APOBP04114 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.22■□□□□ 0.67
APOBP04114 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
APOBP04114 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.2■□□□□ 0.66
APOBP04114 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.19■□□□□ 0.66
APOBP04114 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOBP04114 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOBP04114 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOBP04114 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOBP04114 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.13■□□□□ 0.65
APOBP04114 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
APOBP04114 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC19.1■□□□□ 0.65
APOBP04114 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
APOBP04114 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
APOBP04114 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.08■□□□□ 0.65
APOBP04114 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOBP04114 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOBP04114 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOBP04114 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.05■□□□□ 0.64
APOBP04114 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOBP04114 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC19.05■□□□□ 0.64
APOBP04114 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOBP04114 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.04■□□□□ 0.64
APOBP04114 AL031258.1-201ENST00000623562 325 ntBASIC19.03■□□□□ 0.64
APOBP04114 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.02■□□□□ 0.64
APOBP04114 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.02■□□□□ 0.64
APOBP04114 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC19.02■□□□□ 0.63
APOBP04114 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19■□□□□ 0.63
APOBP04114 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
APOBP04114 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms