Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.59■■■■□ 3.29
PDGFBP01127 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.47■■■■□ 3.27
PDGFBP01127 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.22■■■■□ 3.23
PDGFBP01127 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
PDGFBP01127 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
PDGFBP01127 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC34.19■■■■□ 3.06
PDGFBP01127 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
PDGFBP01127 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.08■■■■□ 3.05
PDGFBP01127 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.98■■■■□ 3.03
PDGFBP01127 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.89■■■■□ 3.02
PDGFBP01127 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
PDGFBP01127 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.66■■■□□ 2.98
PDGFBP01127 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.58■■■□□ 2.97
PDGFBP01127 AL356512.1-201ENST00000607453 1739 ntBASIC33.5■■■□□ 2.95
PDGFBP01127 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
PDGFBP01127 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
PDGFBP01127 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.27■■■□□ 2.92
PDGFBP01127 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
PDGFBP01127 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.11■■■□□ 2.89
PDGFBP01127 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
PDGFBP01127 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
PDGFBP01127 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC33■■■□□ 2.87
PDGFBP01127 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.99■■■□□ 2.87
PDGFBP01127 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
PDGFBP01127 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
PDGFBP01127 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.82■■■□□ 2.84
PDGFBP01127 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.75■■■□□ 2.83
PDGFBP01127 ZNRF2P1-201ENST00000441407 443 ntBASIC32.68■■■□□ 2.82
PDGFBP01127 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
PDGFBP01127 AC006077.2-201ENST00000623591 457 ntBASIC32.59■■■□□ 2.81
PDGFBP01127 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.52■■■□□ 2.8
PDGFBP01127 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
PDGFBP01127 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.24■■■□□ 2.75
PDGFBP01127 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
PDGFBP01127 AC015813.7-201ENST00000623294 581 ntBASIC32.16■■■□□ 2.74
PDGFBP01127 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
PDGFBP01127 AP002365.1-201ENST00000603448 772 ntBASIC31.87■■■□□ 2.69
PDGFBP01127 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
PDGFBP01127 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.83■■■□□ 2.69
PDGFBP01127 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
PDGFBP01127 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
PDGFBP01127 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.69■■■□□ 2.66
PDGFBP01127 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.69■■■□□ 2.66
PDGFBP01127 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
PDGFBP01127 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.64■■■□□ 2.66
PDGFBP01127 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.63■■■□□ 2.65
PDGFBP01127 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.59■■■□□ 2.65
PDGFBP01127 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
PDGFBP01127 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.55■■■□□ 2.64
PDGFBP01127 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.52■■■□□ 2.64
PDGFBP01127 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.49■■■□□ 2.63
PDGFBP01127 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.45■■■□□ 2.63
PDGFBP01127 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.41■■■□□ 2.62
PDGFBP01127 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.39■■■□□ 2.62
PDGFBP01127 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
PDGFBP01127 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.35■■■□□ 2.61
PDGFBP01127 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
PDGFBP01127 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
PDGFBP01127 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
PDGFBP01127 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.26■■■□□ 2.59
PDGFBP01127 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
PDGFBP01127 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PDGFBP01127 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
PDGFBP01127 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
PDGFBP01127 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
PDGFBP01127 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PDGFBP01127 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PDGFBP01127 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.08■■■□□ 2.57
PDGFBP01127 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
PDGFBP01127 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.03■■■□□ 2.56
PDGFBP01127 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.02■■■□□ 2.56
PDGFBP01127 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
PDGFBP01127 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PDGFBP01127 DYNLL1-208ENST00000550178 581 ntBASIC30.92■■■□□ 2.54
PDGFBP01127 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.91■■■□□ 2.54
PDGFBP01127 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
PDGFBP01127 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.81■■■□□ 2.52
PDGFBP01127 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.8■■■□□ 2.52
PDGFBP01127 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
PDGFBP01127 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.79■■■□□ 2.52
PDGFBP01127 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
PDGFBP01127 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PDGFBP01127 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.76■■■□□ 2.51
PDGFBP01127 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.72■■■□□ 2.51
PDGFBP01127 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PDGFBP01127 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PDGFBP01127 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PDGFBP01127 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.67■■■□□ 2.5
PDGFBP01127 AL031258.1-201ENST00000623562 325 ntBASIC30.66■■■□□ 2.5
PDGFBP01127 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.65■■■□□ 2.5
PDGFBP01127 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PDGFBP01127 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.64■■■□□ 2.5
PDGFBP01127 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.64■■■□□ 2.5
PDGFBP01127 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.63■■■□□ 2.49
PDGFBP01127 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.62■■■□□ 2.49
PDGFBP01127 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.62■■■□□ 2.49
PDGFBP01127 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PDGFBP01127 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
PDGFBP01127 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
PDGFBP01127 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms