Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35■■■■□ 3.19
GFRA3O60609 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.7■■■■□ 3.15
GFRA3O60609 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.2■■■■□ 3.06
GFRA3O60609 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.89■■■■□ 3.02
GFRA3O60609 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
GFRA3O60609 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
GFRA3O60609 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.97
GFRA3O60609 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.42■■■□□ 2.94
GFRA3O60609 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.41■■■□□ 2.94
GFRA3O60609 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.08■■■□□ 2.89
GFRA3O60609 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
GFRA3O60609 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
GFRA3O60609 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.82■■■□□ 2.84
GFRA3O60609 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
GFRA3O60609 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
GFRA3O60609 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.63■■■□□ 2.81
GFRA3O60609 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.59■■■□□ 2.81
GFRA3O60609 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.47■■■□□ 2.79
GFRA3O60609 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.41■■■□□ 2.78
GFRA3O60609 ZNRF2P1-201ENST00000441407 443 ntBASIC32.38■■■□□ 2.77
GFRA3O60609 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
GFRA3O60609 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
GFRA3O60609 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
GFRA3O60609 AC006077.2-201ENST00000623591 457 ntBASIC32.24■■■□□ 2.75
GFRA3O60609 AL356512.1-201ENST00000607453 1739 ntBASIC32.17■■■□□ 2.74
GFRA3O60609 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
GFRA3O60609 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
GFRA3O60609 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.05■■■□□ 2.72
GFRA3O60609 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.03■■■□□ 2.72
GFRA3O60609 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
GFRA3O60609 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.84■■■□□ 2.69
GFRA3O60609 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.73■■■□□ 2.67
GFRA3O60609 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
GFRA3O60609 AP002365.1-201ENST00000603448 772 ntBASIC31.54■■■□□ 2.64
GFRA3O60609 AC015813.7-201ENST00000623294 581 ntBASIC31.4■■■□□ 2.62
GFRA3O60609 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.37■■■□□ 2.61
GFRA3O60609 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
GFRA3O60609 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.29■■■□□ 2.6
GFRA3O60609 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
GFRA3O60609 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
GFRA3O60609 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.18■■■□□ 2.58
GFRA3O60609 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
GFRA3O60609 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.15■■■□□ 2.58
GFRA3O60609 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.15■■■□□ 2.58
GFRA3O60609 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.1■■■□□ 2.57
GFRA3O60609 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.09■■■□□ 2.57
GFRA3O60609 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.04■■■□□ 2.56
GFRA3O60609 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
GFRA3O60609 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.97■■■□□ 2.55
GFRA3O60609 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
GFRA3O60609 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
GFRA3O60609 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.81■■■□□ 2.52
GFRA3O60609 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.72■■■□□ 2.51
GFRA3O60609 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
GFRA3O60609 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
GFRA3O60609 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
GFRA3O60609 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
GFRA3O60609 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
GFRA3O60609 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.6■■■□□ 2.49
GFRA3O60609 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
GFRA3O60609 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.53■■■□□ 2.48
GFRA3O60609 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.52■■■□□ 2.48
GFRA3O60609 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.51■■■□□ 2.47
GFRA3O60609 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
GFRA3O60609 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.48■■■□□ 2.47
GFRA3O60609 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.48■■■□□ 2.47
GFRA3O60609 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.48■■■□□ 2.47
GFRA3O60609 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.45■■■□□ 2.47
GFRA3O60609 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.44■■■□□ 2.46
GFRA3O60609 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
GFRA3O60609 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
GFRA3O60609 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.4■■■□□ 2.46
GFRA3O60609 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.36■■■□□ 2.45
GFRA3O60609 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.33■■■□□ 2.45
GFRA3O60609 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
GFRA3O60609 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
GFRA3O60609 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.27■■■□□ 2.44
GFRA3O60609 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
GFRA3O60609 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.27■■■□□ 2.44
GFRA3O60609 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
GFRA3O60609 DYNLL1-208ENST00000550178 581 ntBASIC30.24■■■□□ 2.43
GFRA3O60609 RPS2P35-201ENST00000443417 897 ntBASIC30.23■■■□□ 2.43
GFRA3O60609 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
GFRA3O60609 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
GFRA3O60609 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
GFRA3O60609 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
GFRA3O60609 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.08■■■□□ 2.41
GFRA3O60609 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.08■■■□□ 2.41
GFRA3O60609 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.07■■■□□ 2.4
GFRA3O60609 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.06■■■□□ 2.4
GFRA3O60609 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.06■■■□□ 2.4
GFRA3O60609 RARRES2P7-201ENST00000567349 469 ntBASIC30.06■■■□□ 2.4
GFRA3O60609 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
GFRA3O60609 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
GFRA3O60609 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30■■■□□ 2.39
GFRA3O60609 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
GFRA3O60609 AL031258.1-201ENST00000623562 325 ntBASIC29.96■■■□□ 2.39
GFRA3O60609 AC097358.2-201ENST00000607541 1159 ntBASIC29.93■■■□□ 2.38
GFRA3O60609 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
GFRA3O60609 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms