Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.35■■■□□ 2.29
PCDHA1Q9Y5I3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
PCDHA1Q9Y5I3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
PCDHA1Q9Y5I3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
PCDHA1Q9Y5I3 AC008813.1-201ENST00000536597 885 ntBASIC29.34■■■□□ 2.29
PCDHA1Q9Y5I3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC29.34■■■□□ 2.29
PCDHA1Q9Y5I3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.34■■■□□ 2.29
PCDHA1Q9Y5I3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
PCDHA1Q9Y5I3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC29.33■■■□□ 2.29
PCDHA1Q9Y5I3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
PCDHA1Q9Y5I3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
PCDHA1Q9Y5I3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.31■■■□□ 2.28
PCDHA1Q9Y5I3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
PCDHA1Q9Y5I3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
PCDHA1Q9Y5I3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
PCDHA1Q9Y5I3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
PCDHA1Q9Y5I3 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
PCDHA1Q9Y5I3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
PCDHA1Q9Y5I3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.3■■■□□ 2.28
PCDHA1Q9Y5I3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC29.3■■■□□ 2.28
PCDHA1Q9Y5I3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29.29■■■□□ 2.28
PCDHA1Q9Y5I3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
PCDHA1Q9Y5I3 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
PCDHA1Q9Y5I3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
PCDHA1Q9Y5I3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC29.27■■■□□ 2.28
PCDHA1Q9Y5I3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.27■■■□□ 2.28
PCDHA1Q9Y5I3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.27■■■□□ 2.28
PCDHA1Q9Y5I3 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.26■■■□□ 2.28
PCDHA1Q9Y5I3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
PCDHA1Q9Y5I3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.26■■■□□ 2.27
PCDHA1Q9Y5I3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
PCDHA1Q9Y5I3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.25■■■□□ 2.27
PCDHA1Q9Y5I3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
PCDHA1Q9Y5I3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHA1Q9Y5I3 AC139426.1-201ENST00000568218 2529 ntBASIC29.24■■■□□ 2.27
PCDHA1Q9Y5I3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHA1Q9Y5I3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHA1Q9Y5I3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.23■■■□□ 2.27
PCDHA1Q9Y5I3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
PCDHA1Q9Y5I3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
PCDHA1Q9Y5I3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.22■■■□□ 2.27
PCDHA1Q9Y5I3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.22■■■□□ 2.27
PCDHA1Q9Y5I3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.22■■■□□ 2.27
PCDHA1Q9Y5I3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
PCDHA1Q9Y5I3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
PCDHA1Q9Y5I3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.2■■■□□ 2.26
PCDHA1Q9Y5I3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
PCDHA1Q9Y5I3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC29.2■■■□□ 2.26
PCDHA1Q9Y5I3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
PCDHA1Q9Y5I3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.18■■■□□ 2.26
PCDHA1Q9Y5I3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
PCDHA1Q9Y5I3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.18■■■□□ 2.26
PCDHA1Q9Y5I3 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.18■■■□□ 2.26
PCDHA1Q9Y5I3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
PCDHA1Q9Y5I3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
PCDHA1Q9Y5I3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
PCDHA1Q9Y5I3 AC148477.6-201ENST00000623746 465 ntBASIC29.17■■■□□ 2.26
PCDHA1Q9Y5I3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
PCDHA1Q9Y5I3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
PCDHA1Q9Y5I3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
PCDHA1Q9Y5I3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC29.14■■■□□ 2.26
PCDHA1Q9Y5I3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.14■■■□□ 2.26
PCDHA1Q9Y5I3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
PCDHA1Q9Y5I3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
PCDHA1Q9Y5I3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 HSD17B1P1-201ENST00000590052 955 ntBASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 MIR219A2-201ENST00000608502 1504 ntBASIC29.13■■■□□ 2.25
PCDHA1Q9Y5I3 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHA1Q9Y5I3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHA1Q9Y5I3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC29.12■■■□□ 2.25
PCDHA1Q9Y5I3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC29.12■■■□□ 2.25
PCDHA1Q9Y5I3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.11■■■□□ 2.25
PCDHA1Q9Y5I3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
PCDHA1Q9Y5I3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.11■■■□□ 2.25
PCDHA1Q9Y5I3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC29.1■■■□□ 2.25
PCDHA1Q9Y5I3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHA1Q9Y5I3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC29.1■■■□□ 2.25
PCDHA1Q9Y5I3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHA1Q9Y5I3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHA1Q9Y5I3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms