Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.07■■□□□ 1.76
CBX4O00257 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CBX4O00257 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CBX4O00257 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
CBX4O00257 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
CBX4O00257 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
CBX4O00257 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.03■■□□□ 1.76
CBX4O00257 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CBX4O00257 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CBX4O00257 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.03■■□□□ 1.76
CBX4O00257 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.02■■□□□ 1.76
CBX4O00257 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.02■■□□□ 1.76
CBX4O00257 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
CBX4O00257 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CBX4O00257 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.02■■□□□ 1.76
CBX4O00257 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CBX4O00257 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.01■■□□□ 1.75
CBX4O00257 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CBX4O00257 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
CBX4O00257 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CBX4O00257 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CBX4O00257 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
CBX4O00257 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.99■■□□□ 1.75
CBX4O00257 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CBX4O00257 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
CBX4O00257 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CBX4O00257 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC25.98■■□□□ 1.75
CBX4O00257 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.97■■□□□ 1.75
CBX4O00257 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.97■■□□□ 1.75
CBX4O00257 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CBX4O00257 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
CBX4O00257 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.96■■□□□ 1.75
CBX4O00257 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CBX4O00257 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.96■■□□□ 1.75
CBX4O00257 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.96■■□□□ 1.75
CBX4O00257 HSD17B1P1-201ENST00000590052 955 ntBASIC25.96■■□□□ 1.75
CBX4O00257 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CBX4O00257 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CBX4O00257 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
CBX4O00257 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CBX4O00257 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CBX4O00257 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CBX4O00257 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.95■■□□□ 1.74
CBX4O00257 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CBX4O00257 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
CBX4O00257 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
CBX4O00257 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CBX4O00257 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
CBX4O00257 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CBX4O00257 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CBX4O00257 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.93■■□□□ 1.74
CBX4O00257 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.93■■□□□ 1.74
CBX4O00257 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CBX4O00257 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
CBX4O00257 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CBX4O00257 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
CBX4O00257 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CBX4O00257 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CBX4O00257 AC008813.1-201ENST00000536597 885 ntBASIC25.91■■□□□ 1.74
CBX4O00257 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CBX4O00257 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CBX4O00257 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CBX4O00257 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CBX4O00257 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CBX4O00257 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CBX4O00257 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.9■■□□□ 1.74
CBX4O00257 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CBX4O00257 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
CBX4O00257 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CBX4O00257 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CBX4O00257 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
CBX4O00257 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.89■■□□□ 1.74
CBX4O00257 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.89■■□□□ 1.74
CBX4O00257 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CBX4O00257 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.87■■□□□ 1.73
CBX4O00257 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
CBX4O00257 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.86■■□□□ 1.73
CBX4O00257 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
CBX4O00257 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
CBX4O00257 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.85■■□□□ 1.73
CBX4O00257 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CBX4O00257 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CBX4O00257 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.84■■□□□ 1.73
CBX4O00257 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CBX4O00257 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
CBX4O00257 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
CBX4O00257 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
CBX4O00257 AP002414.2-202ENST00000590929 1450 ntBASIC25.83■■□□□ 1.73
CBX4O00257 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
CBX4O00257 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CBX4O00257 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
CBX4O00257 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
CBX4O00257 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CBX4O00257 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.81■■□□□ 1.72
CBX4O00257 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CBX4O00257 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
CBX4O00257 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC25.81■■□□□ 1.72
CBX4O00257 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.81■■□□□ 1.72
CBX4O00257 DRD5P2-201ENST00000421395 2012 ntBASIC25.81■■□□□ 1.72
CBX4O00257 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms