Protein–RNA interactions for Protein: O15041

SEMA3E, Semaphorin-3E, humanhuman

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3EO15041 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.3■■■□□ 2.6
SEMA3EO15041 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.3■■■□□ 2.6
SEMA3EO15041 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SEMA3EO15041 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SEMA3EO15041 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.28■■■□□ 2.6
SEMA3EO15041 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.28■■■□□ 2.6
SEMA3EO15041 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SEMA3EO15041 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SEMA3EO15041 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SEMA3EO15041 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC31.27■■■□□ 2.6
SEMA3EO15041 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SEMA3EO15041 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SEMA3EO15041 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
SEMA3EO15041 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SEMA3EO15041 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
SEMA3EO15041 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.25■■■□□ 2.59
SEMA3EO15041 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SEMA3EO15041 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.24■■■□□ 2.59
SEMA3EO15041 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.23■■■□□ 2.59
SEMA3EO15041 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SEMA3EO15041 AC008813.1-201ENST00000536597 885 ntBASIC31.23■■■□□ 2.59
SEMA3EO15041 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.23■■■□□ 2.59
SEMA3EO15041 HSD17B1P1-201ENST00000590052 955 ntBASIC31.23■■■□□ 2.59
SEMA3EO15041 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.23■■■□□ 2.59
SEMA3EO15041 MEST-211ENST00000437945 1455 ntTSL 5 BASIC31.22■■■□□ 2.59
SEMA3EO15041 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SEMA3EO15041 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC31.22■■■□□ 2.59
SEMA3EO15041 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.22■■■□□ 2.59
SEMA3EO15041 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SEMA3EO15041 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SEMA3EO15041 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
SEMA3EO15041 AP004833.2-201ENST00000532228 1454 ntBASIC31.21■■■□□ 2.59
SEMA3EO15041 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
SEMA3EO15041 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.2■■■□□ 2.58
SEMA3EO15041 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.2■■■□□ 2.58
SEMA3EO15041 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SEMA3EO15041 AC110285.7-201ENST00000624417 1536 ntBASIC31.19■■■□□ 2.58
SEMA3EO15041 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.19■■■□□ 2.58
SEMA3EO15041 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
SEMA3EO15041 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.19■■■□□ 2.58
SEMA3EO15041 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.19■■■□□ 2.58
SEMA3EO15041 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.18■■■□□ 2.58
SEMA3EO15041 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SEMA3EO15041 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SEMA3EO15041 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
SEMA3EO15041 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SEMA3EO15041 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.17■■■□□ 2.58
SEMA3EO15041 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SEMA3EO15041 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SEMA3EO15041 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SEMA3EO15041 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SEMA3EO15041 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
SEMA3EO15041 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
SEMA3EO15041 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SEMA3EO15041 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
SEMA3EO15041 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
SEMA3EO15041 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SEMA3EO15041 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SEMA3EO15041 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SEMA3EO15041 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SEMA3EO15041 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SEMA3EO15041 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.11■■■□□ 2.57
SEMA3EO15041 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
SEMA3EO15041 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
SEMA3EO15041 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SEMA3EO15041 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.09■■■□□ 2.57
SEMA3EO15041 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.09■■■□□ 2.57
SEMA3EO15041 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.09■■■□□ 2.57
SEMA3EO15041 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
SEMA3EO15041 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.08■■■□□ 2.57
SEMA3EO15041 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SEMA3EO15041 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.07■■■□□ 2.56
SEMA3EO15041 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
SEMA3EO15041 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SEMA3EO15041 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SEMA3EO15041 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SEMA3EO15041 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SEMA3EO15041 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
SEMA3EO15041 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.05■■■□□ 2.56
SEMA3EO15041 AC148477.6-201ENST00000623746 465 ntBASIC31.05■■■□□ 2.56
SEMA3EO15041 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.05■■■□□ 2.56
SEMA3EO15041 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC31.05■■■□□ 2.56
SEMA3EO15041 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
SEMA3EO15041 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SEMA3EO15041 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SEMA3EO15041 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SEMA3EO15041 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
SEMA3EO15041 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.03■■■□□ 2.56
SEMA3EO15041 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.03■■■□□ 2.56
SEMA3EO15041 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SEMA3EO15041 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms