Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.18■■■□□ 2.74
ZC3H4Q9UPT8 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC32.16■■■□□ 2.74
ZC3H4Q9UPT8 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
ZC3H4Q9UPT8 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
ZC3H4Q9UPT8 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
ZC3H4Q9UPT8 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.14■■■□□ 2.74
ZC3H4Q9UPT8 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC32.13■■■□□ 2.73
ZC3H4Q9UPT8 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
ZC3H4Q9UPT8 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC32.11■■■□□ 2.73
ZC3H4Q9UPT8 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
ZC3H4Q9UPT8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.1■■■□□ 2.73
ZC3H4Q9UPT8 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
ZC3H4Q9UPT8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.1■■■□□ 2.73
ZC3H4Q9UPT8 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC32.09■■■□□ 2.73
ZC3H4Q9UPT8 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
ZC3H4Q9UPT8 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
ZC3H4Q9UPT8 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC32.08■■■□□ 2.73
ZC3H4Q9UPT8 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC32.07■■■□□ 2.72
ZC3H4Q9UPT8 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC32.07■■■□□ 2.72
ZC3H4Q9UPT8 LINC00273-201ENST00000539813 1452 ntBASIC32.07■■■□□ 2.72
ZC3H4Q9UPT8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.06■■■□□ 2.72
ZC3H4Q9UPT8 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC32.06■■■□□ 2.72
ZC3H4Q9UPT8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
ZC3H4Q9UPT8 U85056.1-201ENST00000616429 682 ntBASIC32.05■■■□□ 2.72
ZC3H4Q9UPT8 TSPY13P-201ENST00000338964 914 ntBASIC32.03■■■□□ 2.72
ZC3H4Q9UPT8 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.03■■■□□ 2.72
ZC3H4Q9UPT8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC32.03■■■□□ 2.72
ZC3H4Q9UPT8 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
ZC3H4Q9UPT8 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
ZC3H4Q9UPT8 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
ZC3H4Q9UPT8 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.02■■■□□ 2.72
ZC3H4Q9UPT8 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.02■■■□□ 2.72
ZC3H4Q9UPT8 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
ZC3H4Q9UPT8 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
ZC3H4Q9UPT8 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
ZC3H4Q9UPT8 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.99■■■□□ 2.71
ZC3H4Q9UPT8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
ZC3H4Q9UPT8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
ZC3H4Q9UPT8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
ZC3H4Q9UPT8 RARRES2P1-201ENST00000474487 481 ntBASIC31.98■■■□□ 2.71
ZC3H4Q9UPT8 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.97■■■□□ 2.71
ZC3H4Q9UPT8 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.95■■■□□ 2.7
ZC3H4Q9UPT8 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
ZC3H4Q9UPT8 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
ZC3H4Q9UPT8 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
ZC3H4Q9UPT8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
ZC3H4Q9UPT8 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.91■■■□□ 2.7
ZC3H4Q9UPT8 ATP5G2P3-201ENST00000429083 425 ntBASIC31.91■■■□□ 2.7
ZC3H4Q9UPT8 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
ZC3H4Q9UPT8 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
ZC3H4Q9UPT8 AC004987.1-201ENST00000428627 508 ntBASIC31.9■■■□□ 2.7
ZC3H4Q9UPT8 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.9■■■□□ 2.7
ZC3H4Q9UPT8 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.9■■■□□ 2.7
ZC3H4Q9UPT8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.89■■■□□ 2.7
ZC3H4Q9UPT8 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
ZC3H4Q9UPT8 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.88■■■□□ 2.69
ZC3H4Q9UPT8 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
ZC3H4Q9UPT8 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
ZC3H4Q9UPT8 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.88■■■□□ 2.69
ZC3H4Q9UPT8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
ZC3H4Q9UPT8 KRT18P60-201ENST00000312876 1297 ntBASIC31.87■■■□□ 2.69
ZC3H4Q9UPT8 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
ZC3H4Q9UPT8 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.87■■■□□ 2.69
ZC3H4Q9UPT8 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
ZC3H4Q9UPT8 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.86■■■□□ 2.69
ZC3H4Q9UPT8 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
ZC3H4Q9UPT8 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.86■■■□□ 2.69
ZC3H4Q9UPT8 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.86■■■□□ 2.69
ZC3H4Q9UPT8 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
ZC3H4Q9UPT8 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
ZC3H4Q9UPT8 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
ZC3H4Q9UPT8 AC060814.1-201ENST00000554326 538 ntBASIC31.84■■■□□ 2.69
ZC3H4Q9UPT8 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
ZC3H4Q9UPT8 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
ZC3H4Q9UPT8 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
ZC3H4Q9UPT8 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
ZC3H4Q9UPT8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
ZC3H4Q9UPT8 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
ZC3H4Q9UPT8 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
ZC3H4Q9UPT8 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.78■■■□□ 2.68
ZC3H4Q9UPT8 AC019069.1-201ENST00000610008 1333 ntBASIC31.78■■■□□ 2.68
ZC3H4Q9UPT8 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.77■■■□□ 2.68
ZC3H4Q9UPT8 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
ZC3H4Q9UPT8 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
ZC3H4Q9UPT8 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
ZC3H4Q9UPT8 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.75■■■□□ 2.67
ZC3H4Q9UPT8 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
ZC3H4Q9UPT8 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.74■■■□□ 2.67
ZC3H4Q9UPT8 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
ZC3H4Q9UPT8 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.73■■■□□ 2.67
ZC3H4Q9UPT8 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.72■■■□□ 2.67
ZC3H4Q9UPT8 AL035685.1-201ENST00000636663 812 ntBASIC31.72■■■□□ 2.67
ZC3H4Q9UPT8 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
ZC3H4Q9UPT8 AC148477.6-201ENST00000623746 465 ntBASIC31.7■■■□□ 2.66
ZC3H4Q9UPT8 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
ZC3H4Q9UPT8 AC092296.2-201ENST00000589470 999 ntBASIC31.69■■■□□ 2.66
ZC3H4Q9UPT8 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.68■■■□□ 2.66
ZC3H4Q9UPT8 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.68■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms