Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.72■■□□□ 1.71
TRIM39Q9HCM9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
TRIM39Q9HCM9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
TRIM39Q9HCM9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
TRIM39Q9HCM9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
TRIM39Q9HCM9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.7■■□□□ 1.7
TRIM39Q9HCM9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
TRIM39Q9HCM9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRIM39Q9HCM9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.69■■□□□ 1.7
TRIM39Q9HCM9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRIM39Q9HCM9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TRIM39Q9HCM9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRIM39Q9HCM9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRIM39Q9HCM9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRIM39Q9HCM9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.67■■□□□ 1.7
TRIM39Q9HCM9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
TRIM39Q9HCM9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TRIM39Q9HCM9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.66■■□□□ 1.7
TRIM39Q9HCM9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.66■■□□□ 1.7
TRIM39Q9HCM9 MIR7108-201ENST00000614319 87 ntBASIC25.66■■□□□ 1.7
TRIM39Q9HCM9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.65■■□□□ 1.7
TRIM39Q9HCM9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TRIM39Q9HCM9 ABCB10P1-201ENST00000614297 2181 ntBASIC25.65■■□□□ 1.7
TRIM39Q9HCM9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
TRIM39Q9HCM9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.64■■□□□ 1.7
TRIM39Q9HCM9 LINC00273-201ENST00000539813 1452 ntBASIC25.64■■□□□ 1.69
TRIM39Q9HCM9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
TRIM39Q9HCM9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.63■■□□□ 1.69
TRIM39Q9HCM9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.62■■□□□ 1.69
TRIM39Q9HCM9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
TRIM39Q9HCM9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
TRIM39Q9HCM9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TRIM39Q9HCM9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
TRIM39Q9HCM9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.6■■□□□ 1.69
TRIM39Q9HCM9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.6■■□□□ 1.69
TRIM39Q9HCM9 LINC01971-201ENST00000617888 1048 ntBASIC25.6■■□□□ 1.69
TRIM39Q9HCM9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
TRIM39Q9HCM9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.59■■□□□ 1.69
TRIM39Q9HCM9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRIM39Q9HCM9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRIM39Q9HCM9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
TRIM39Q9HCM9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
TRIM39Q9HCM9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.58■■□□□ 1.69
TRIM39Q9HCM9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.58■■□□□ 1.69
TRIM39Q9HCM9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.68
TRIM39Q9HCM9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
TRIM39Q9HCM9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
TRIM39Q9HCM9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.57■■□□□ 1.68
TRIM39Q9HCM9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.56■■□□□ 1.68
TRIM39Q9HCM9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.55■■□□□ 1.68
TRIM39Q9HCM9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TRIM39Q9HCM9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
TRIM39Q9HCM9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.55■■□□□ 1.68
TRIM39Q9HCM9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
TRIM39Q9HCM9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
TRIM39Q9HCM9 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRIM39Q9HCM9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.53■■□□□ 1.68
TRIM39Q9HCM9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
TRIM39Q9HCM9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
TRIM39Q9HCM9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRIM39Q9HCM9 AC135983.2-203ENST00000454486 1613 ntBASIC25.52■■□□□ 1.68
TRIM39Q9HCM9 DUX4L11-201ENST00000611504 1267 ntBASIC25.52■■□□□ 1.68
TRIM39Q9HCM9 DUX4L12-201ENST00000614593 1267 ntBASIC25.52■■□□□ 1.68
TRIM39Q9HCM9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.52■■□□□ 1.68
TRIM39Q9HCM9 DUX4L14-201ENST00000621227 1267 ntBASIC25.52■■□□□ 1.68
TRIM39Q9HCM9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TRIM39Q9HCM9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRIM39Q9HCM9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRIM39Q9HCM9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TRIM39Q9HCM9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TRIM39Q9HCM9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TRIM39Q9HCM9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
TRIM39Q9HCM9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM39Q9HCM9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
TRIM39Q9HCM9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
TRIM39Q9HCM9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
TRIM39Q9HCM9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TRIM39Q9HCM9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.47■■□□□ 1.67
TRIM39Q9HCM9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
TRIM39Q9HCM9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.47■■□□□ 1.67
TRIM39Q9HCM9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM39Q9HCM9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM39Q9HCM9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM39Q9HCM9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 WHAMMP2-203ENST00000563942 1603 ntBASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 AP004833.2-201ENST00000532228 1454 ntBASIC25.46■■□□□ 1.67
TRIM39Q9HCM9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.44■■□□□ 1.66
TRIM39Q9HCM9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.44■■□□□ 1.66
TRIM39Q9HCM9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 AL139393.2-201ENST00000608721 2025 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L13-201ENST00000554103 1267 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L15-201ENST00000611059 1267 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L23-201ENST00000615195 1269 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L24-201ENST00000617576 1269 ntBASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms