Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.16■■□□□ 1.14
FOXC2Q99958 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
FOXC2Q99958 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXC2Q99958 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC22.15■■□□□ 1.14
FOXC2Q99958 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXC2Q99958 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
FOXC2Q99958 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
FOXC2Q99958 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
FOXC2Q99958 AC008813.1-201ENST00000536597 885 ntBASIC22.14■■□□□ 1.13
FOXC2Q99958 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.12■■□□□ 1.13
FOXC2Q99958 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.12■■□□□ 1.13
FOXC2Q99958 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC22.12■■□□□ 1.13
FOXC2Q99958 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC22.12■■□□□ 1.13
FOXC2Q99958 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXC2Q99958 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.11■■□□□ 1.13
FOXC2Q99958 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC22.11■■□□□ 1.13
FOXC2Q99958 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC22.11■■□□□ 1.13
FOXC2Q99958 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXC2Q99958 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXC2Q99958 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
FOXC2Q99958 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
FOXC2Q99958 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.1■■□□□ 1.13
FOXC2Q99958 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
FOXC2Q99958 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
FOXC2Q99958 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXC2Q99958 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC22.09■■□□□ 1.13
FOXC2Q99958 LINC00273-201ENST00000539813 1452 ntBASIC22.09■■□□□ 1.13
FOXC2Q99958 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
FOXC2Q99958 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.07■■□□□ 1.12
FOXC2Q99958 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC22.06■■□□□ 1.12
FOXC2Q99958 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
FOXC2Q99958 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
FOXC2Q99958 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
FOXC2Q99958 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
FOXC2Q99958 U85056.1-201ENST00000616429 682 ntBASIC22.04■■□□□ 1.12
FOXC2Q99958 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
FOXC2Q99958 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXC2Q99958 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.03■■□□□ 1.12
FOXC2Q99958 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXC2Q99958 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXC2Q99958 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.03■■□□□ 1.12
FOXC2Q99958 TSPY13P-201ENST00000338964 914 ntBASIC22.02■■□□□ 1.12
FOXC2Q99958 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
FOXC2Q99958 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.01■■□□□ 1.11
FOXC2Q99958 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22■■□□□ 1.11
FOXC2Q99958 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC22■■□□□ 1.11
FOXC2Q99958 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
FOXC2Q99958 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXC2Q99958 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
FOXC2Q99958 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.99■■□□□ 1.11
FOXC2Q99958 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXC2Q99958 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXC2Q99958 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXC2Q99958 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.98■■□□□ 1.11
FOXC2Q99958 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXC2Q99958 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
FOXC2Q99958 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.97■■□□□ 1.11
FOXC2Q99958 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
FOXC2Q99958 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXC2Q99958 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXC2Q99958 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXC2Q99958 RARRES2P1-201ENST00000474487 481 ntBASIC21.96■■□□□ 1.11
FOXC2Q99958 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.96■■□□□ 1.11
FOXC2Q99958 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
FOXC2Q99958 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.95■■□□□ 1.1
FOXC2Q99958 AC004987.1-201ENST00000428627 508 ntBASIC21.94■■□□□ 1.1
FOXC2Q99958 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXC2Q99958 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXC2Q99958 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.93■■□□□ 1.1
FOXC2Q99958 ATP5G2P3-201ENST00000429083 425 ntBASIC21.93■■□□□ 1.1
FOXC2Q99958 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
FOXC2Q99958 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.93■■□□□ 1.1
FOXC2Q99958 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.92■■□□□ 1.1
FOXC2Q99958 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.92■■□□□ 1.1
FOXC2Q99958 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
FOXC2Q99958 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXC2Q99958 KRT18P60-201ENST00000312876 1297 ntBASIC21.9■■□□□ 1.1
FOXC2Q99958 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.9■■□□□ 1.1
FOXC2Q99958 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.9■■□□□ 1.1
FOXC2Q99958 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
FOXC2Q99958 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
FOXC2Q99958 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
FOXC2Q99958 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
FOXC2Q99958 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
FOXC2Q99958 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
FOXC2Q99958 AC060814.1-201ENST00000554326 538 ntBASIC21.89■■□□□ 1.09
FOXC2Q99958 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
FOXC2Q99958 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.88■■□□□ 1.09
FOXC2Q99958 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.88■■□□□ 1.09
FOXC2Q99958 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
FOXC2Q99958 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
FOXC2Q99958 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
FOXC2Q99958 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
FOXC2Q99958 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
FOXC2Q99958 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXC2Q99958 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
FOXC2Q99958 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
FOXC2Q99958 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXC2Q99958 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXC2Q99958 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms