Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
BLOC1S4Q9NUP1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
BLOC1S4Q9NUP1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
BLOC1S4Q9NUP1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
BLOC1S4Q9NUP1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.47■■■□□ 2.31
BLOC1S4Q9NUP1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
BLOC1S4Q9NUP1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.46■■■□□ 2.31
BLOC1S4Q9NUP1 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
BLOC1S4Q9NUP1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.45■■■□□ 2.31
BLOC1S4Q9NUP1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
BLOC1S4Q9NUP1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
BLOC1S4Q9NUP1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
BLOC1S4Q9NUP1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.43■■■□□ 2.3
BLOC1S4Q9NUP1 ABCB10P3-201ENST00000561950 2166 ntBASIC29.43■■■□□ 2.3
BLOC1S4Q9NUP1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
BLOC1S4Q9NUP1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.42■■■□□ 2.3
BLOC1S4Q9NUP1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
BLOC1S4Q9NUP1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
BLOC1S4Q9NUP1 AC005559.1-201ENST00000589661 871 ntBASIC29.42■■■□□ 2.3
BLOC1S4Q9NUP1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.42■■■□□ 2.3
BLOC1S4Q9NUP1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
BLOC1S4Q9NUP1 DUX4L28-201ENST00000623687 678 ntBASIC29.4■■■□□ 2.3
BLOC1S4Q9NUP1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
BLOC1S4Q9NUP1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC29.39■■■□□ 2.3
BLOC1S4Q9NUP1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
BLOC1S4Q9NUP1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
BLOC1S4Q9NUP1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
BLOC1S4Q9NUP1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.38■■■□□ 2.29
BLOC1S4Q9NUP1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.38■■■□□ 2.29
BLOC1S4Q9NUP1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
BLOC1S4Q9NUP1 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
BLOC1S4Q9NUP1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
BLOC1S4Q9NUP1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
BLOC1S4Q9NUP1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
BLOC1S4Q9NUP1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC29.36■■■□□ 2.29
BLOC1S4Q9NUP1 AC139426.1-201ENST00000568218 2529 ntBASIC29.35■■■□□ 2.29
BLOC1S4Q9NUP1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
BLOC1S4Q9NUP1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.34■■■□□ 2.29
BLOC1S4Q9NUP1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
BLOC1S4Q9NUP1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
BLOC1S4Q9NUP1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.33■■■□□ 2.29
BLOC1S4Q9NUP1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
BLOC1S4Q9NUP1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
BLOC1S4Q9NUP1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.33■■■□□ 2.29
BLOC1S4Q9NUP1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC29.32■■■□□ 2.28
BLOC1S4Q9NUP1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
BLOC1S4Q9NUP1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
BLOC1S4Q9NUP1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
BLOC1S4Q9NUP1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
BLOC1S4Q9NUP1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
BLOC1S4Q9NUP1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
BLOC1S4Q9NUP1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC29.3■■■□□ 2.28
BLOC1S4Q9NUP1 AP006261.1-201ENST00000584783 668 ntBASIC29.3■■■□□ 2.28
BLOC1S4Q9NUP1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.3■■■□□ 2.28
BLOC1S4Q9NUP1 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
BLOC1S4Q9NUP1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
BLOC1S4Q9NUP1 AL162393.1-201ENST00000437852 946 ntBASIC29.28■■■□□ 2.28
BLOC1S4Q9NUP1 MIR3665-201ENST00000578708 105 ntBASIC29.28■■■□□ 2.28
BLOC1S4Q9NUP1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC29.28■■■□□ 2.28
BLOC1S4Q9NUP1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
BLOC1S4Q9NUP1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
BLOC1S4Q9NUP1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
BLOC1S4Q9NUP1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.27■■■□□ 2.28
BLOC1S4Q9NUP1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.27■■■□□ 2.28
BLOC1S4Q9NUP1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
BLOC1S4Q9NUP1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
BLOC1S4Q9NUP1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
BLOC1S4Q9NUP1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
BLOC1S4Q9NUP1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC29.25■■■□□ 2.27
BLOC1S4Q9NUP1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
BLOC1S4Q9NUP1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
BLOC1S4Q9NUP1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
BLOC1S4Q9NUP1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.24■■■□□ 2.27
BLOC1S4Q9NUP1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
BLOC1S4Q9NUP1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.24■■■□□ 2.27
BLOC1S4Q9NUP1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
BLOC1S4Q9NUP1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
BLOC1S4Q9NUP1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
BLOC1S4Q9NUP1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.23■■■□□ 2.27
BLOC1S4Q9NUP1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
BLOC1S4Q9NUP1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.22■■■□□ 2.27
BLOC1S4Q9NUP1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.21■■■□□ 2.27
BLOC1S4Q9NUP1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
BLOC1S4Q9NUP1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
BLOC1S4Q9NUP1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
BLOC1S4Q9NUP1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.27
BLOC1S4Q9NUP1 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.2■■■□□ 2.26
BLOC1S4Q9NUP1 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
BLOC1S4Q9NUP1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
BLOC1S4Q9NUP1 AC087741.3-201ENST00000624270 1347 ntBASIC29.2■■■□□ 2.26
BLOC1S4Q9NUP1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.19■■■□□ 2.26
BLOC1S4Q9NUP1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
BLOC1S4Q9NUP1 AL139393.2-201ENST00000608721 2025 ntBASIC29.18■■■□□ 2.26
BLOC1S4Q9NUP1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
BLOC1S4Q9NUP1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
BLOC1S4Q9NUP1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.16■■■□□ 2.26
BLOC1S4Q9NUP1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
BLOC1S4Q9NUP1 MIR6090-201ENST00000622481 60 ntBASIC29.15■■■□□ 2.26
BLOC1S4Q9NUP1 AC127502.1-201ENST00000399971 1502 ntBASIC29.15■■■□□ 2.26
BLOC1S4Q9NUP1 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 654.4 ms