Protein–RNA interactions for Protein: Q96D70

R3HDM4, R3H domain-containing protein 4, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4Q96D70 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.52■■□□□ 1.03
R3HDM4Q96D70 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
R3HDM4Q96D70 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
R3HDM4Q96D70 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
R3HDM4Q96D70 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
R3HDM4Q96D70 AL162393.1-201ENST00000437852 946 ntBASIC21.5■■□□□ 1.03
R3HDM4Q96D70 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
R3HDM4Q96D70 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
R3HDM4Q96D70 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.5■■□□□ 1.03
R3HDM4Q96D70 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
R3HDM4Q96D70 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
R3HDM4Q96D70 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.49■■□□□ 1.03
R3HDM4Q96D70 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.49■■□□□ 1.03
R3HDM4Q96D70 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.48■■□□□ 1.03
R3HDM4Q96D70 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 WASH5P-204ENST00000632292 975 ntBASIC21.47■■□□□ 1.03
R3HDM4Q96D70 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
R3HDM4Q96D70 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
R3HDM4Q96D70 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
R3HDM4Q96D70 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.46■■□□□ 1.03
R3HDM4Q96D70 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
R3HDM4Q96D70 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
R3HDM4Q96D70 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.45■■□□□ 1.02
R3HDM4Q96D70 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
R3HDM4Q96D70 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
R3HDM4Q96D70 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.44■■□□□ 1.02
R3HDM4Q96D70 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.44■■□□□ 1.02
R3HDM4Q96D70 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
R3HDM4Q96D70 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.44■■□□□ 1.02
R3HDM4Q96D70 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
R3HDM4Q96D70 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.43■■□□□ 1.02
R3HDM4Q96D70 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
R3HDM4Q96D70 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.43■■□□□ 1.02
R3HDM4Q96D70 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
R3HDM4Q96D70 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
R3HDM4Q96D70 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
R3HDM4Q96D70 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.42■■□□□ 1.02
R3HDM4Q96D70 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
R3HDM4Q96D70 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
R3HDM4Q96D70 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
R3HDM4Q96D70 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
R3HDM4Q96D70 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
R3HDM4Q96D70 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
R3HDM4Q96D70 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.39■■□□□ 1.01
R3HDM4Q96D70 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
R3HDM4Q96D70 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
R3HDM4Q96D70 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
R3HDM4Q96D70 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
R3HDM4Q96D70 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
R3HDM4Q96D70 MIR3665-201ENST00000578708 105 ntBASIC21.36■■□□□ 1.01
R3HDM4Q96D70 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
R3HDM4Q96D70 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
R3HDM4Q96D70 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
R3HDM4Q96D70 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
R3HDM4Q96D70 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
R3HDM4Q96D70 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
R3HDM4Q96D70 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
R3HDM4Q96D70 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
R3HDM4Q96D70 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.35■■□□□ 1.01
R3HDM4Q96D70 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
R3HDM4Q96D70 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
R3HDM4Q96D70 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
R3HDM4Q96D70 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
R3HDM4Q96D70 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1.01
R3HDM4Q96D70 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
R3HDM4Q96D70 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
R3HDM4Q96D70 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
R3HDM4Q96D70 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
R3HDM4Q96D70 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.31■■□□□ 1
R3HDM4Q96D70 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.31■■□□□ 1
R3HDM4Q96D70 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
R3HDM4Q96D70 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
R3HDM4Q96D70 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
R3HDM4Q96D70 AC135731.1-201ENST00000569415 2548 ntBASIC21.3■■□□□ 1
R3HDM4Q96D70 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.29■■□□□ 1
R3HDM4Q96D70 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
R3HDM4Q96D70 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.29■■□□□ 1
R3HDM4Q96D70 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.29■■□□□ 1
R3HDM4Q96D70 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
R3HDM4Q96D70 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.29■■□□□ 1
R3HDM4Q96D70 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
R3HDM4Q96D70 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.28■■□□□ 1
R3HDM4Q96D70 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
R3HDM4Q96D70 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
R3HDM4Q96D70 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
R3HDM4Q96D70 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
R3HDM4Q96D70 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
R3HDM4Q96D70 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.28■■□□□ 1
R3HDM4Q96D70 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
R3HDM4Q96D70 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
R3HDM4Q96D70 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.27■■□□□ 1
R3HDM4Q96D70 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
R3HDM4Q96D70 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.26■□□□□ 0.99
R3HDM4Q96D70 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
R3HDM4Q96D70 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms