Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
HMGB1P09429 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.13■■■□□ 2.57
HMGB1P09429 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
HMGB1P09429 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
HMGB1P09429 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
HMGB1P09429 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.11■■■□□ 2.57
HMGB1P09429 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
HMGB1P09429 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
HMGB1P09429 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
HMGB1P09429 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
HMGB1P09429 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.1■■■□□ 2.57
HMGB1P09429 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
HMGB1P09429 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
HMGB1P09429 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
HMGB1P09429 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.09■■■□□ 2.57
HMGB1P09429 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
HMGB1P09429 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
HMGB1P09429 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
HMGB1P09429 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
HMGB1P09429 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
HMGB1P09429 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
HMGB1P09429 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
HMGB1P09429 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
HMGB1P09429 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.06■■■□□ 2.56
HMGB1P09429 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
HMGB1P09429 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
HMGB1P09429 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.05■■■□□ 2.56
HMGB1P09429 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.04■■■□□ 2.56
HMGB1P09429 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
HMGB1P09429 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
HMGB1P09429 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
HMGB1P09429 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
HMGB1P09429 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
HMGB1P09429 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
HMGB1P09429 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
HMGB1P09429 AC005559.1-201ENST00000589661 871 ntBASIC31.01■■■□□ 2.55
HMGB1P09429 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
HMGB1P09429 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31■■■□□ 2.55
HMGB1P09429 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
HMGB1P09429 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
HMGB1P09429 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
HMGB1P09429 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31■■■□□ 2.55
HMGB1P09429 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
HMGB1P09429 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
HMGB1P09429 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.97■■■□□ 2.55
HMGB1P09429 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
HMGB1P09429 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.96■■■□□ 2.55
HMGB1P09429 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
HMGB1P09429 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
HMGB1P09429 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.95■■■□□ 2.55
HMGB1P09429 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.95■■■□□ 2.55
HMGB1P09429 AC139426.1-201ENST00000568218 2529 ntBASIC30.94■■■□□ 2.54
HMGB1P09429 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
HMGB1P09429 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
HMGB1P09429 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
HMGB1P09429 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
HMGB1P09429 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.92■■■□□ 2.54
HMGB1P09429 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.91■■■□□ 2.54
HMGB1P09429 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
HMGB1P09429 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
HMGB1P09429 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.9■■■□□ 2.54
HMGB1P09429 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
HMGB1P09429 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.9■■■□□ 2.54
HMGB1P09429 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
HMGB1P09429 AL139393.2-201ENST00000608721 2025 ntBASIC30.9■■■□□ 2.54
HMGB1P09429 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
HMGB1P09429 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.89■■■□□ 2.54
HMGB1P09429 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.53
HMGB1P09429 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
HMGB1P09429 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
HMGB1P09429 AP006261.1-201ENST00000584783 668 ntBASIC30.87■■■□□ 2.53
HMGB1P09429 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.86■■■□□ 2.53
HMGB1P09429 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.86■■■□□ 2.53
HMGB1P09429 MIR3665-201ENST00000578708 105 ntBASIC30.86■■■□□ 2.53
HMGB1P09429 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.86■■■□□ 2.53
HMGB1P09429 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.86■■■□□ 2.53
HMGB1P09429 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
HMGB1P09429 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.85■■■□□ 2.53
HMGB1P09429 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
HMGB1P09429 DUX4L28-201ENST00000623687 678 ntBASIC30.84■■■□□ 2.53
HMGB1P09429 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
HMGB1P09429 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
HMGB1P09429 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
HMGB1P09429 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
HMGB1P09429 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.81■■■□□ 2.52
HMGB1P09429 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
HMGB1P09429 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
HMGB1P09429 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.81■■■□□ 2.52
HMGB1P09429 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.81■■■□□ 2.52
HMGB1P09429 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
HMGB1P09429 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
HMGB1P09429 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
HMGB1P09429 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.79■■■□□ 2.52
HMGB1P09429 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
HMGB1P09429 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
HMGB1P09429 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.78■■■□□ 2.52
HMGB1P09429 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.78■■■□□ 2.52
HMGB1P09429 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
HMGB1P09429 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.77■■■□□ 2.52
HMGB1P09429 AC127502.1-201ENST00000399971 1502 ntBASIC30.77■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms