Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.37■■■□□ 2.45
MMP1P03956 AL162393.1-201ENST00000437852 946 ntBASIC30.36■■■□□ 2.45
MMP1P03956 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
MMP1P03956 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
MMP1P03956 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
MMP1P03956 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.35■■■□□ 2.45
MMP1P03956 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
MMP1P03956 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.33■■■□□ 2.45
MMP1P03956 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.32■■■□□ 2.44
MMP1P03956 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
MMP1P03956 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
MMP1P03956 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.32■■■□□ 2.44
MMP1P03956 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
MMP1P03956 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
MMP1P03956 AP006261.1-201ENST00000584783 668 ntBASIC30.31■■■□□ 2.44
MMP1P03956 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
MMP1P03956 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
MMP1P03956 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
MMP1P03956 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.3■■■□□ 2.44
MMP1P03956 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
MMP1P03956 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
MMP1P03956 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.29■■■□□ 2.44
MMP1P03956 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.29■■■□□ 2.44
MMP1P03956 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.29■■■□□ 2.44
MMP1P03956 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.29■■■□□ 2.44
MMP1P03956 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
MMP1P03956 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
MMP1P03956 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
MMP1P03956 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.27■■■□□ 2.44
MMP1P03956 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.27■■■□□ 2.44
MMP1P03956 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
MMP1P03956 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
MMP1P03956 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
MMP1P03956 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.24■■■□□ 2.43
MMP1P03956 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
MMP1P03956 AC139426.1-201ENST00000568218 2529 ntBASIC30.24■■■□□ 2.43
MMP1P03956 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
MMP1P03956 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
MMP1P03956 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
MMP1P03956 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
MMP1P03956 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
MMP1P03956 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
MMP1P03956 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
MMP1P03956 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
MMP1P03956 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
MMP1P03956 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
MMP1P03956 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
MMP1P03956 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
MMP1P03956 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
MMP1P03956 AC005559.1-201ENST00000589661 871 ntBASIC30.2■■■□□ 2.43
MMP1P03956 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
MMP1P03956 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
MMP1P03956 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
MMP1P03956 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
MMP1P03956 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
MMP1P03956 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
MMP1P03956 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
MMP1P03956 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
MMP1P03956 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
MMP1P03956 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
MMP1P03956 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
MMP1P03956 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.16■■■□□ 2.42
MMP1P03956 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
MMP1P03956 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
MMP1P03956 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.14■■■□□ 2.42
MMP1P03956 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
MMP1P03956 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
MMP1P03956 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.13■■■□□ 2.41
MMP1P03956 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
MMP1P03956 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.13■■■□□ 2.41
MMP1P03956 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
MMP1P03956 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.12■■■□□ 2.41
MMP1P03956 DUX4L28-201ENST00000623687 678 ntBASIC30.12■■■□□ 2.41
MMP1P03956 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
MMP1P03956 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
MMP1P03956 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
MMP1P03956 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.11■■■□□ 2.41
MMP1P03956 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
MMP1P03956 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.1■■■□□ 2.41
MMP1P03956 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
MMP1P03956 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
MMP1P03956 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.1■■■□□ 2.41
MMP1P03956 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
MMP1P03956 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
MMP1P03956 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.09■■■□□ 2.41
MMP1P03956 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
MMP1P03956 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.07■■■□□ 2.4
MMP1P03956 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.07■■■□□ 2.4
MMP1P03956 AL139393.2-201ENST00000608721 2025 ntBASIC30.06■■■□□ 2.4
MMP1P03956 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
MMP1P03956 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.06■■■□□ 2.4
MMP1P03956 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
MMP1P03956 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
MMP1P03956 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.05■■■□□ 2.4
MMP1P03956 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.04■■■□□ 2.4
MMP1P03956 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MMP1P03956 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MMP1P03956 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.04■■■□□ 2.4
MMP1P03956 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.03■■■□□ 2.4
MMP1P03956 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms