Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDX1P47902 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CDX1P47902 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDX1P47902 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDX1P47902 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CDX1P47902 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDX1P47902 AL391121.1-201ENST00000607967 1349 ntBASIC21.33■■□□□ 1.01
CDX1P47902 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDX1P47902 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CDX1P47902 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDX1P47902 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CDX1P47902 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX1P47902 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CDX1P47902 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.3■■□□□ 1
CDX1P47902 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CDX1P47902 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.29■■□□□ 1
CDX1P47902 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.29■■□□□ 1
CDX1P47902 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX1P47902 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDX1P47902 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDX1P47902 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.27■■□□□ 1
CDX1P47902 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX1P47902 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX1P47902 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX1P47902 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.26■□□□□ 0.99
CDX1P47902 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX1P47902 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX1P47902 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
CDX1P47902 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX1P47902 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX1P47902 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX1P47902 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.23■□□□□ 0.99
CDX1P47902 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDX1P47902 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CDX1P47902 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX1P47902 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX1P47902 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CDX1P47902 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX1P47902 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CDX1P47902 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX1P47902 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX1P47902 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX1P47902 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.2■□□□□ 0.98
CDX1P47902 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX1P47902 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.18■□□□□ 0.98
CDX1P47902 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDX1P47902 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX1P47902 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.17■□□□□ 0.98
CDX1P47902 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX1P47902 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.17■□□□□ 0.98
CDX1P47902 WASH5P-204ENST00000632292 975 ntBASIC21.16■□□□□ 0.98
CDX1P47902 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CDX1P47902 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX1P47902 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDX1P47902 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX1P47902 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.14■□□□□ 0.97
CDX1P47902 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDX1P47902 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC21.12■□□□□ 0.97
CDX1P47902 AP006261.1-201ENST00000584783 668 ntBASIC21.12■□□□□ 0.97
CDX1P47902 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX1P47902 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.11■□□□□ 0.97
CDX1P47902 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX1P47902 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX1P47902 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CDX1P47902 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDX1P47902 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX1P47902 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
CDX1P47902 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDX1P47902 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDX1P47902 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDX1P47902 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX1P47902 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX1P47902 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX1P47902 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.07■□□□□ 0.96
CDX1P47902 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX1P47902 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDX1P47902 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX1P47902 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX1P47902 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.06■□□□□ 0.96
CDX1P47902 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX1P47902 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX1P47902 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.05■□□□□ 0.96
CDX1P47902 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
CDX1P47902 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms