Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.91■■■□□ 2.7
COL2A1P02458 ZNRF2P2-203ENST00000454624 420 ntBASIC31.9■■■□□ 2.7
COL2A1P02458 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.9■■■□□ 2.7
COL2A1P02458 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
COL2A1P02458 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.88■■■□□ 2.69
COL2A1P02458 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL2A1P02458 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL2A1P02458 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.84■■■□□ 2.69
COL2A1P02458 AC108673.1-201ENST00000510422 1159 ntBASIC31.84■■■□□ 2.69
COL2A1P02458 DUX4L29-201ENST00000425409 679 ntBASIC31.83■■■□□ 2.69
COL2A1P02458 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL2A1P02458 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
COL2A1P02458 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.82■■■□□ 2.68
COL2A1P02458 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL2A1P02458 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL2A1P02458 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL2A1P02458 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
COL2A1P02458 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.79■■■□□ 2.68
COL2A1P02458 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.79■■■□□ 2.68
COL2A1P02458 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
COL2A1P02458 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL2A1P02458 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL2A1P02458 MIR6090-201ENST00000622481 60 ntBASIC31.78■■■□□ 2.68
COL2A1P02458 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
COL2A1P02458 AC021231.2-201ENST00000594613 730 ntBASIC31.78■■■□□ 2.68
COL2A1P02458 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.78■■■□□ 2.68
COL2A1P02458 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL2A1P02458 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL2A1P02458 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
COL2A1P02458 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
COL2A1P02458 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL2A1P02458 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.76■■■□□ 2.67
COL2A1P02458 HLA-V-202ENST00000446817 847 ntBASIC31.75■■■□□ 2.67
COL2A1P02458 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL2A1P02458 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
COL2A1P02458 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
COL2A1P02458 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.72■■■□□ 2.67
COL2A1P02458 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL2A1P02458 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.72■■■□□ 2.67
COL2A1P02458 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
COL2A1P02458 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.7■■■□□ 2.66
COL2A1P02458 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.7■■■□□ 2.66
COL2A1P02458 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
COL2A1P02458 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL2A1P02458 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.69■■■□□ 2.66
COL2A1P02458 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.68■■■□□ 2.66
COL2A1P02458 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL2A1P02458 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL2A1P02458 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
COL2A1P02458 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.66■■■□□ 2.66
COL2A1P02458 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
COL2A1P02458 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.65■■■□□ 2.66
COL2A1P02458 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.65■■■□□ 2.66
COL2A1P02458 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL2A1P02458 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL2A1P02458 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.63■■■□□ 2.65
COL2A1P02458 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
COL2A1P02458 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.62■■■□□ 2.65
COL2A1P02458 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.62■■■□□ 2.65
COL2A1P02458 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL2A1P02458 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL2A1P02458 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL2A1P02458 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.61■■■□□ 2.65
COL2A1P02458 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL2A1P02458 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.59■■■□□ 2.65
COL2A1P02458 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.59■■■□□ 2.65
COL2A1P02458 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL2A1P02458 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.57■■■□□ 2.65
COL2A1P02458 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL2A1P02458 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.57■■■□□ 2.64
COL2A1P02458 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.53■■■□□ 2.64
COL2A1P02458 LINC01971-201ENST00000617888 1048 ntBASIC31.52■■■□□ 2.64
COL2A1P02458 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL2A1P02458 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL2A1P02458 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.51■■■□□ 2.63
COL2A1P02458 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
COL2A1P02458 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL2A1P02458 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.49■■■□□ 2.63
COL2A1P02458 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL2A1P02458 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
COL2A1P02458 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
COL2A1P02458 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
COL2A1P02458 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
COL2A1P02458 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL2A1P02458 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL2A1P02458 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL2A1P02458 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL2A1P02458 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.46■■■□□ 2.63
COL2A1P02458 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL2A1P02458 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL2A1P02458 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.44■■■□□ 2.62
COL2A1P02458 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL2A1P02458 MIR639-201ENST00000384974 98 ntBASIC31.43■■■□□ 2.62
COL2A1P02458 MIR4449-201ENST00000578365 66 ntBASIC31.43■■■□□ 2.62
COL2A1P02458 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL2A1P02458 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
COL2A1P02458 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.42■■■□□ 2.62
COL2A1P02458 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL2A1P02458 DUX4L11-201ENST00000611504 1267 ntBASIC31.42■■■□□ 2.62
COL2A1P02458 DUX4L12-201ENST00000614593 1267 ntBASIC31.42■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms