Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
GGPS1O95749 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.23■■■□□ 2.43
GGPS1O95749 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.23■■■□□ 2.43
GGPS1O95749 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
GGPS1O95749 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.21■■■□□ 2.43
GGPS1O95749 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
GGPS1O95749 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
GGPS1O95749 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.19■■■□□ 2.42
GGPS1O95749 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.19■■■□□ 2.42
GGPS1O95749 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
GGPS1O95749 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
GGPS1O95749 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
GGPS1O95749 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
GGPS1O95749 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.16■■■□□ 2.42
GGPS1O95749 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.15■■■□□ 2.42
GGPS1O95749 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
GGPS1O95749 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
GGPS1O95749 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.14■■■□□ 2.42
GGPS1O95749 ZNRF2P2-203ENST00000454624 420 ntBASIC30.14■■■□□ 2.42
GGPS1O95749 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
GGPS1O95749 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
GGPS1O95749 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
GGPS1O95749 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
GGPS1O95749 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
GGPS1O95749 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.12■■■□□ 2.41
GGPS1O95749 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
GGPS1O95749 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
GGPS1O95749 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.11■■■□□ 2.41
GGPS1O95749 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.11■■■□□ 2.41
GGPS1O95749 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
GGPS1O95749 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
GGPS1O95749 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
GGPS1O95749 DUX4L29-201ENST00000425409 679 ntBASIC30.1■■■□□ 2.41
GGPS1O95749 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
GGPS1O95749 MIR6090-201ENST00000622481 60 ntBASIC30.09■■■□□ 2.41
GGPS1O95749 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
GGPS1O95749 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
GGPS1O95749 AC108673.1-201ENST00000510422 1159 ntBASIC30.08■■■□□ 2.41
GGPS1O95749 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
GGPS1O95749 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
GGPS1O95749 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.07■■■□□ 2.4
GGPS1O95749 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
GGPS1O95749 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
GGPS1O95749 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.04■■■□□ 2.4
GGPS1O95749 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.04■■■□□ 2.4
GGPS1O95749 AC021231.2-201ENST00000594613 730 ntBASIC30.04■■■□□ 2.4
GGPS1O95749 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
GGPS1O95749 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.03■■■□□ 2.4
GGPS1O95749 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
GGPS1O95749 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
GGPS1O95749 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30■■■□□ 2.39
GGPS1O95749 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
GGPS1O95749 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
GGPS1O95749 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.98■■■□□ 2.39
GGPS1O95749 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
GGPS1O95749 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.97■■■□□ 2.39
GGPS1O95749 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.97■■■□□ 2.39
GGPS1O95749 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
GGPS1O95749 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.95■■■□□ 2.38
GGPS1O95749 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.95■■■□□ 2.38
GGPS1O95749 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.94■■■□□ 2.38
GGPS1O95749 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
GGPS1O95749 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
GGPS1O95749 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.94■■■□□ 2.38
GGPS1O95749 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
GGPS1O95749 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
GGPS1O95749 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
GGPS1O95749 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
GGPS1O95749 HLA-V-202ENST00000446817 847 ntBASIC29.92■■■□□ 2.38
GGPS1O95749 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
GGPS1O95749 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC29.91■■■□□ 2.38
GGPS1O95749 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.91■■■□□ 2.38
GGPS1O95749 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.91■■■□□ 2.38
GGPS1O95749 AL161658.1-201ENST00000623641 1967 ntBASIC29.91■■■□□ 2.38
GGPS1O95749 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
GGPS1O95749 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
GGPS1O95749 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
GGPS1O95749 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
GGPS1O95749 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
GGPS1O95749 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
GGPS1O95749 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
GGPS1O95749 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
GGPS1O95749 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
GGPS1O95749 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
GGPS1O95749 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
GGPS1O95749 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
GGPS1O95749 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
GGPS1O95749 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
GGPS1O95749 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
GGPS1O95749 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.84■■■□□ 2.37
GGPS1O95749 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.84■■■□□ 2.37
GGPS1O95749 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.84■■■□□ 2.37
GGPS1O95749 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.83■■■□□ 2.37
GGPS1O95749 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.83■■■□□ 2.37
GGPS1O95749 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
GGPS1O95749 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
GGPS1O95749 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
GGPS1O95749 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
GGPS1O95749 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
GGPS1O95749 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms