Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FDFT1-220ENST00000531733 712 ntTSL 223.24■■□□□ 1.317e-7■□□□□ 10.8
SF3B1O75533 FDFT1-219ENST00000531249 768 ntTSL 214.68□□□□□ -0.067e-7■□□□□ 10.8
SF3B1O75533 FDFT1-221ENST00000532266 583 ntTSL 59.09□□□□□ -0.957e-7■□□□□ 10.8
SF3B1O75533 SNHG4-206ENST00000508735 310 ntTSL 1 (best)13.47□□□□□ -0.255e-8■□□□□ 10.8
SF3B1O75533 SRSF5-208ENST00000554929 947 ntTSL 210.81□□□□□ -0.685e-8■□□□□ 10.8
SF3B1O75533 SNORA74A-201ENST00000364089 198 ntBASIC5.96□□□□□ -1.465e-8■□□□□ 10.8
SF3B1O75533 HNRNPA1-206ENST00000547708 530 ntTSL 411.89□□□□□ -0.513e-7■□□□□ 10.8
SF3B1O75533 SRSF4-204ENST00000489898 393 ntTSL 312.99□□□□□ -0.332e-7■□□□□ 10.8
SF3B1O75533 SRSF4-205ENST00000497015 516 ntTSL 210.77□□□□□ -0.692e-7■□□□□ 10.8
SF3B1O75533 IARS-208ENST00000472894 651 ntTSL 37.59□□□□□ -1.192e-7■□□□□ 10.8
SF3B1O75533 SRSF4-207ENST00000622143 614 ntTSL 25.36□□□□□ -1.552e-7■□□□□ 10.8
SF3B1O75533 SRSF4-203ENST00000477193 206 ntTSL 23.44□□□□□ -1.862e-7■□□□□ 10.8
SF3B1O75533 TMEM165-208ENST00000511710 731 ntTSL 37.92□□□□□ -1.141e-6■□□□□ 10.7
SF3B1O75533 TMEM165-202ENST00000502797 639 ntTSL 36.15□□□□□ -1.431e-6■□□□□ 10.7
SF3B1O75533 NRDC-211ENST00000491410 1020 ntTSL 221.39■■□□□ 1.018e-10■□□□□ 10.7
SF3B1O75533 NRDC-205ENST00000468722 754 ntTSL 317.44■□□□□ 0.388e-10■□□□□ 10.7
SF3B1O75533 MACF1-215ENST00000473843 598 ntTSL 212.46□□□□□ -0.415e-6■□□□□ 10.7
SF3B1O75533 MACF1-213ENST00000469490 842 ntTSL 54.77□□□□□ -1.655e-6■□□□□ 10.7
SF3B1O75533 ALDOA-214ENST00000564688 613 ntTSL 512.5□□□□□ -0.411e-7■□□□□ 10.7
SF3B1O75533 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)17.8■□□□□ 0.442e-7■□□□□ 10.7
SF3B1O75533 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.1■□□□□ 0.172e-7■□□□□ 10.7
SF3B1O75533 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC15.06■□□□□ 02e-7■□□□□ 10.7
SF3B1O75533 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.672e-7■□□□□ 10.7
SF3B1O75533 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC8.83□□□□□ -12e-7■□□□□ 10.7
SF3B1O75533 AC139887.2-203ENST00000503185 618 ntTSL 2 BASIC11.58□□□□□ -0.564e-6■□□□□ 10.6
SF3B1O75533 AC139887.2-204ENST00000503405 550 ntTSL 3 BASIC11.58□□□□□ -0.564e-6■□□□□ 10.6
SF3B1O75533 YOD1-201ENST00000315927 6265 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.574e-6■□□□□ 10.6
SF3B1O75533 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC8.06□□□□□ -1.124e-6■□□□□ 10.6
SF3B1O75533 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.016e-8■□□□□ 10.5
SF3B1O75533 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.836e-8■□□□□ 10.5
SF3B1O75533 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19■□□□□ 0.636e-8■□□□□ 10.5
SF3B1O75533 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.026e-8■□□□□ 10.5
SF3B1O75533 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.666e-8■□□□□ 10.5
SF3B1O75533 ATP13A3-208ENST00000485194 586 ntTSL 53.61□□□□□ -1.836e-8■□□□□ 10.5
SF3B1O75533 DDX17-204ENST00000431312 1853 ntTSL 1 (best)13.87□□□□□ -0.191e-11■□□□□ 10.5
SF3B1O75533 DDX17-207ENST00000475004 443 ntTSL 310.99□□□□□ -0.651e-11■□□□□ 10.5
SF3B1O75533 PIM1-203ENST00000479509 675 ntTSL 213.64□□□□□ -0.231e-6■□□□□ 10.4
SF3B1O75533 PIM1-202ENST00000468243 818 ntTSL 1 (best)11.89□□□□□ -0.511e-6■□□□□ 10.4
SF3B1O75533 NOP56-216ENST00000492135 1143 ntTSL 1 (best)15.53■□□□□ 0.083e-8■□□□□ 10.4
SF3B1O75533 NOP56-206ENST00000466447 1094 ntTSL 213.08□□□□□ -0.323e-8■□□□□ 10.4
SF3B1O75533 NOP56-215ENST00000490753 640 ntTSL 210.76□□□□□ -0.693e-8■□□□□ 10.4
SF3B1O75533 NOP56-205ENST00000462630 859 ntTSL 210.19□□□□□ -0.783e-8■□□□□ 10.4
SF3B1O75533 NOP56-208ENST00000467857 735 ntTSL 29.54□□□□□ -0.883e-8■□□□□ 10.4
SF3B1O75533 NOP56-211ENST00000471023 592 ntTSL 27.98□□□□□ -1.133e-8■□□□□ 10.4
SF3B1O75533 NOP56-212ENST00000480447 651 ntTSL 26.93□□□□□ -1.33e-8■□□□□ 10.4
SF3B1O75533 SNORD57-201ENST00000448188 72 ntBASIC-0.89□□□□□ -2.553e-8■□□□□ 10.4
SF3B1O75533 HNRNPA1-212ENST00000551679 359 ntTSL 26.06□□□□□ -1.442e-8■□□□□ 10.3
SF3B1O75533 P4HA1-206ENST00000464310 415 ntTSL 52.32□□□□□ -2.045e-6■□□□□ 10.2
SF3B1O75533 RPL13-215ENST00000570149 435 ntTSL 213.46□□□□□ -0.258e-8■□□□□ 10.2
SF3B1O75533 TAF15-210ENST00000604694 891 ntTSL 518.73■□□□□ 0.594e-7■□□□□ 10.2
SF3B1O75533 ALDOA-218ENST00000566146 365 ntTSL 1 (best)10.06□□□□□ -0.88e-9■□□□□ 10.2
SF3B1O75533 SLC6A8-202ENST00000413787 468 ntTSL 519.68■□□□□ 0.741e-6■□□□□ 10.2
SF3B1O75533 GTPBP2-209ENST00000480263 898 ntTSL 215.19■□□□□ 0.023e-7■□□□□ 10.1
SF3B1O75533 CD46-216ENST00000490278 747 ntTSL 22.81□□□□□ -1.962e-8■□□□□ 10.1
SF3B1O75533 CD46-218ENST00000496723 661 ntTSL 52.16□□□□□ -2.062e-8■□□□□ 10.1
SF3B1O75533 ATP5B-205ENST00000548647 682 ntTSL 517.46■□□□□ 0.382e-6■□□□□ 10
SF3B1O75533 DDX3X-205ENST00000480592 1001 ntTSL 1 (best)8.51□□□□□ -1.051e-6■□□□□ 10
SF3B1O75533 DDX3X-207ENST00000610559 542 ntTSL 47.88□□□□□ -1.151e-6■□□□□ 10
SF3B1O75533 NUP214-224ENST00000530863 560 ntTSL 54.41□□□□□ -1.79e-11■□□□□ 10
SF3B1O75533 DCAF8-217ENST00000497354 738 ntTSL 59.98□□□□□ -0.816e-6■□□□□ 9.9
SF3B1O75533 RBM39-230ENST00000476806 754 ntTSL 58.2□□□□□ -1.15e-7■□□□□ 9.9
SF3B1O75533 RBM39-225ENST00000465158 825 ntTSL 27.09□□□□□ -1.275e-7■□□□□ 9.9
SF3B1O75533 RBM39-237ENST00000492779 2316 ntTSL 26.69□□□□□ -1.345e-7■□□□□ 9.9
SF3B1O75533 RBM39-244ENST00000615771 686 ntTSL 55.94□□□□□ -1.465e-7■□□□□ 9.9
SF3B1O75533 RBM39-240ENST00000495293 759 ntTSL 24.79□□□□□ -1.645e-7■□□□□ 9.9
SF3B1O75533 RBM39-217ENST00000448303 1008 ntTSL 54.72□□□□□ -1.655e-7■□□□□ 9.9
SF3B1O75533 RBM39-227ENST00000470563 384 ntTSL 34.72□□□□□ -1.655e-7■□□□□ 9.9
SF3B1O75533 RBM39-229ENST00000475651 555 ntTSL 54.22□□□□□ -1.735e-7■□□□□ 9.9
SF3B1O75533 RBM39-228ENST00000471635 549 ntTSL 21.6□□□□□ -2.155e-7■□□□□ 9.9
SF3B1O75533 SCARNA9-201ENST00000530422 353 ntBASIC7.57□□□□□ -1.21e-6■□□□□ 9.9
SF3B1O75533 SRSF11-213ENST00000481648 389 ntTSL 311.4□□□□□ -0.584e-7■□□□□ 9.8
SF3B1O75533 SRSF11-215ENST00000486667 662 ntTSL 510.77□□□□□ -0.694e-7■□□□□ 9.8
SF3B1O75533 HNRNPU-230ENST00000640657 4323 ntTSL 55.12□□□□□ -1.594e-7■□□□□ 9.8
SF3B1O75533 HNRNPU-203ENST00000366527 12852 ntTSL 23.97□□□□□ -1.774e-7■□□□□ 9.8
SF3B1O75533 HNRNPU-211ENST00000489705 451 ntTSL 32.78□□□□□ -1.964e-7■□□□□ 9.8
SF3B1O75533 HNRNPA1-209ENST00000550482 832 ntTSL 216.38■□□□□ 0.213e-7■□□□□ 9.8
SF3B1O75533 RBM39-221ENST00000461283 2415 ntTSL 53.17□□□□□ -1.96e-7■□□□□ 9.7
SF3B1O75533 TBPL1-206ENST00000477527 634 ntTSL 53.42□□□□□ -1.868e-6■□□□□ 9.7
SF3B1O75533 EPRS-204ENST00000477030 1526 ntTSL 1 (best)22.53■■□□□ 1.22e-6■□□□□ 9.7
SF3B1O75533 ATP5B-210ENST00000552959 1085 ntTSL 320.75■□□□□ 0.919e-7■□□□□ 9.7
SF3B1O75533 ATP5B-211ENST00000553007 814 ntTSL 520.62■□□□□ 0.899e-7■□□□□ 9.7
SF3B1O75533 ATP5B-209ENST00000551570 399 ntTSL 38.61□□□□□ -1.039e-7■□□□□ 9.7
SF3B1O75533 ALDOA-217ENST00000566130 801 ntTSL 215.46■□□□□ 0.075e-9■□□□□ 9.6
SF3B1O75533 HNRNPH1-237ENST00000520415 620 ntTSL 313.85□□□□□ -0.192e-6■□□□□ 9.6
SF3B1O75533 RNF217-209ENST00000519971 274 ntTSL 312.89□□□□□ -0.352e-6■□□□□ 9.6
SF3B1O75533 SRSF5-202ENST00000553369 613 ntTSL 210.61□□□□□ -0.712e-6■□□□□ 9.6
SF3B1O75533 SRSF5-206ENST00000554021 567 ntTSL 4 BASIC8.89□□□□□ -0.992e-6■□□□□ 9.6
SF3B1O75533 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.31□□□□□ -1.242e-6■□□□□ 9.6
SF3B1O75533 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.432e-6■□□□□ 9.6
SF3B1O75533 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.672e-6■□□□□ 9.6
SF3B1O75533 HNRNPH1-229ENST00000518548 527 ntTSL 22.36□□□□□ -2.032e-6■□□□□ 9.6
SF3B1O75533 ZNF638-219ENST00000487638 4233 ntTSL 1 (best)2.22□□□□□ -2.052e-6■□□□□ 9.6
SF3B1O75533 ZNF638-225ENST00000494241 703 ntTSL 32.09□□□□□ -2.082e-6■□□□□ 9.6
SF3B1O75533 ZNF638-202ENST00000409407 4470 ntTSL 21.97□□□□□ -2.092e-6■□□□□ 9.6
SF3B1O75533 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.14■□□□□ 0.491e-12■□□□□ 9.6
SF3B1O75533 HNRNPH1-249ENST00000524180 997 ntTSL 515.49■□□□□ 0.071e-12■□□□□ 9.6
SF3B1O75533 RBM39-214ENST00000434927 716 ntTSL 510.3□□□□□ -0.767e-7■□□□□ 9.5
SF3B1O75533 RBM39-208ENST00000416108 577 ntTSL 48.97□□□□□ -0.977e-7■□□□□ 9.5
SF3B1O75533 RBM39-218ENST00000449489 432 ntTSL 58.17□□□□□ -1.17e-7■□□□□ 9.5
SF3B1O75533 RBM39-232ENST00000481037 687 ntTSL 35.99□□□□□ -1.457e-7■□□□□ 9.5
Retrieved 100 of 46,956 protein–RNA pairs in 3868.4 ms