RNA–Protein interactions for RNA: ENST00000508735.5

SNHG4-206, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 1 (best)

Gene SNHG4, Length 310 nt, Biotype processed transcript, Subcellular localisation Nucleoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-206ENST00000508735 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
SNHG4-206ENST00000508735 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
SNHG4-206ENST00000508735 ABCC9O60706 1549 aa27.42■■□□□ 1.98
SNHG4-206ENST00000508735 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
SNHG4-206ENST00000508735 NACADO15069 1562 aa25.93■■□□□ 1.74
SNHG4-206ENST00000508735 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
SNHG4-206ENST00000508735 DNAJC5BQ9UF47 199 aa25.71■■□□□ 1.71
SNHG4-206ENST00000508735 MYO15BQ96JP2 1530 aa25.58■■□□□ 1.68
SNHG4-206ENST00000508735 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
SNHG4-206ENST00000508735 UNC13AQ9UPW8 1703 aa25.53■■□□□ 1.68
SNHG4-206ENST00000508735 ZCCHC6Q5VYS8 1495 aaKnown RBP25.39■■□□□ 1.65
SNHG4-206ENST00000508735 BICRAQ9NZM4 1560 aa25.37■■□□□ 1.65
SNHG4-206ENST00000508735 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
SNHG4-206ENST00000508735 SCRIBQ14160 1630 aa25.03■■□□□ 1.6
SNHG4-206ENST00000508735 SHROOM4Q9ULL8 1493 aa24.97■■□□□ 1.59
SNHG4-206ENST00000508735 CC2D2AQ9P2K1 1620 aa24.77■■□□□ 1.56
SNHG4-206ENST00000508735 EIF4G1Q04637 1599 aaKnown RBP24.72■■□□□ 1.55
SNHG4-206ENST00000508735 CECR2Q9BXF3 1484 aa24.68■■□□□ 1.54
SNHG4-206ENST00000508735 NCAPD3P42695 1498 aa23.94■■□□□ 1.42
SNHG4-206ENST00000508735 ATAD2BQ9ULI0 1458 aa23.89■■□□□ 1.42
SNHG4-206ENST00000508735 SMARCA4P51532 1647 aa23.88■■□□□ 1.41
SNHG4-206ENST00000508735 SMARCA2P51531 1590 aa23.8■■□□□ 1.4
SNHG4-206ENST00000508735 HMGXB3Q12766 1538 aa23.77■■□□□ 1.4
SNHG4-206ENST00000508735 BAZ1AQ9NRL2 1556 aaPredicted RBP23.74■■□□□ 1.39
SNHG4-206ENST00000508735 BAZ1BQ9UIG0 1483 aaKnown RBP23.65■■□□□ 1.38
SNHG4-206ENST00000508735 ERCC6Q03468 1493 aa23.64■■□□□ 1.38
SNHG4-206ENST00000508735 PEG3Q9GZU2 1588 aa23.64■■□□□ 1.37
SNHG4-206ENST00000508735 MROH2BQ7Z745 1585 aa23.61■■□□□ 1.37
SNHG4-206ENST00000508735 CUX2O14529 1486 aa23.58■■□□□ 1.37
SNHG4-206ENST00000508735 NESP48681 1621 aa23.58■■□□□ 1.36
SNHG4-206ENST00000508735 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
SNHG4-206ENST00000508735 LAMC3Q9Y6N6 1575 aa23.39■■□□□ 1.33
SNHG4-206ENST00000508735 WIZO95785 1651 aa23.33■■□□□ 1.33
SNHG4-206ENST00000508735 THOC2Q8NI27 1593 aaKnown RBP23.32■■□□□ 1.32
SNHG4-206ENST00000508735 KIF21AQ7Z4S6 1674 aa23.27■■□□□ 1.32
SNHG4-206ENST00000508735 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
SNHG4-206ENST00000508735 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
SNHG4-206ENST00000508735 RSF1Q96T23 1441 aaPredicted RBP23.13■■□□□ 1.29
SNHG4-206ENST00000508735 MRC2Q9UBG0 1479 aa23.06■■□□□ 1.28
SNHG4-206ENST00000508735 TOP2AP11388 1531 aaKnown RBP23.02■■□□□ 1.28
SNHG4-206ENST00000508735 WDR62O43379 1518 aa23.01■■□□□ 1.27
SNHG4-206ENST00000508735 CFTRP13569 1480 aa22.98■■□□□ 1.27
SNHG4-206ENST00000508735 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
SNHG4-206ENST00000508735 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
SNHG4-206ENST00000508735 URB2Q14146 1524 aaKnown RBP22.78■■□□□ 1.24
SNHG4-206ENST00000508735 CCDC88BA6NC98 1476 aa22.78■■□□□ 1.24
SNHG4-206ENST00000508735 PRDM2Q13029 1718 aa22.74■■□□□ 1.23
SNHG4-206ENST00000508735 TOPBP1Q92547 1522 aa22.53■■□□□ 1.2
SNHG4-206ENST00000508735 TRIM41Q8WV44 630 aa22.53■■□□□ 1.2
SNHG4-206ENST00000508735 OSCARQ8IYS5 282 aa22.52■■□□□ 1.2
SNHG4-206ENST00000508735 IFT140Q96RY7 1462 aa22.5■■□□□ 1.19
SNHG4-206ENST00000508735 ZNF608Q9ULD9 1512 aaPredicted RBP22.5■■□□□ 1.19
SNHG4-206ENST00000508735 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
SNHG4-206ENST00000508735 DNMBPQ6XZF7 1577 aa22.45■■□□□ 1.18
SNHG4-206ENST00000508735 EIF4G3O43432 1585 aaKnown RBP22.37■■□□□ 1.17
SNHG4-206ENST00000508735 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
SNHG4-206ENST00000508735 POLA1P09884 1462 aaPredicted RBP22.31■■□□□ 1.16
SNHG4-206ENST00000508735 AQRO60306 1485 aaKnown RBP eCLIP22.3■■□□□ 1.164e-10■■■■■ 32.5
SNHG4-206ENST00000508735 RIMBP3CA6NJZ7 1639 aa22.24■■□□□ 1.15
SNHG4-206ENST00000508735 RIMBP3BA6NNM3 1639 aa22.24■■□□□ 1.15
SNHG4-206ENST00000508735 RIMBP3Q9UFD9 1639 aa22.24■■□□□ 1.15
SNHG4-206ENST00000508735 RAD54L2Q9Y4B4 1467 aa22.24■■□□□ 1.15
SNHG4-206ENST00000508735 SOGA1O94964 1423 aa22.21■■□□□ 1.15
SNHG4-206ENST00000508735 CHD1O14646 1710 aa22.19■■□□□ 1.14
SNHG4-206ENST00000508735 CUX1P39880 1505 aa22.18■■□□□ 1.14
SNHG4-206ENST00000508735 FGD5Q6ZNL6 1462 aa22.18■■□□□ 1.14
SNHG4-206ENST00000508735 ARHGEF11O15085 1522 aa22.17■■□□□ 1.14
SNHG4-206ENST00000508735 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
SNHG4-206ENST00000508735 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
SNHG4-206ENST00000508735 FBLN2P98095 1184 aa22.13■■□□□ 1.13
SNHG4-206ENST00000508735 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
SNHG4-206ENST00000508735 SNAPC4Q5SXM2 1469 aa22.07■■□□□ 1.12
SNHG4-206ENST00000508735 CYB5RLQ6IPT4 315 aa22■■□□□ 1.11
SNHG4-206ENST00000508735 GRIN2BQ13224 1484 aa22■■□□□ 1.11
SNHG4-206ENST00000508735 MAGI1Q96QZ7 1491 aaPredicted RBP21.99■■□□□ 1.11
SNHG4-206ENST00000508735 ARAP1Q96P48 1450 aa21.96■■□□□ 1.11
SNHG4-206ENST00000508735 CHMP7Q8WUX9 453 aaPredicted RBP21.96■■□□□ 1.11
SNHG4-206ENST00000508735 GAPVD1Q14C86 1478 aa21.94■■□□□ 1.1
SNHG4-206ENST00000508735 CLASP1Q7Z460 1538 aa21.94■■□□□ 1.1
SNHG4-206ENST00000508735 PBRM1Q86U86 1689 aa21.93■■□□□ 1.1
SNHG4-206ENST00000508735 ABCA10Q8WWZ4 1543 aa21.92■■□□□ 1.1
SNHG4-206ENST00000508735 SYNJ2O15056 1496 aa21.92■■□□□ 1.1
SNHG4-206ENST00000508735 SYNJ1O43426 1573 aa21.91■■□□□ 1.1
SNHG4-206ENST00000508735 ABCA5Q8WWZ7 1642 aa21.9■■□□□ 1.1
SNHG4-206ENST00000508735 WRNQ14191 1432 aaPredicted RBP eCLIP21.83■■□□□ 1.09
SNHG4-206ENST00000508735 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
SNHG4-206ENST00000508735 BIVM-ERCC5R4GMW8 1640 aa21.82■■□□□ 1.08
SNHG4-206ENST00000508735 TRHP20396 242 aaPredicted RBP21.73■■□□□ 1.07
SNHG4-206ENST00000508735 GRIN2AQ12879 1464 aa21.72■■□□□ 1.07
SNHG4-206ENST00000508735 ADAMTS12P58397 1594 aa21.72■■□□□ 1.07
SNHG4-206ENST00000508735 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
SNHG4-206ENST00000508735 FHAD1B1AJZ9 1412 aa21.65■■□□□ 1.06
SNHG4-206ENST00000508735 NUP160Q12769 1436 aa21.65■■□□□ 1.06
SNHG4-206ENST00000508735 ERICH3Q5RHP9 1530 aa21.65■■□□□ 1.06
SNHG4-206ENST00000508735 ERCC6L2Q5T890 1561 aa21.63■■□□□ 1.05
SNHG4-206ENST00000508735 SHROOM2Q13796 1616 aa21.55■■□□□ 1.04
SNHG4-206ENST00000508735 PRG4Q92954 1404 aaPredicted RBP21.44■■□□□ 1.02
SNHG4-206ENST00000508735 RUSC2Q8N2Y8 1516 aa21.42■■□□□ 1.02
SNHG4-206ENST00000508735 JPH4Q96JJ6 628 aa21.42■■□□□ 1.02
SNHG4-206ENST00000508735 IGF1RP08069 1367 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms