RNA–Protein interactions for RNA: ENST00000496723.1

CD46-218, Transcript of CD46 molecule, humanhuman

TSL 5

Gene CD46, Length 661 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-218ENST00000496723 AEBP2Q6ZN18 517 aaPredicted RBP25.83■■□□□ 1.73
CD46-218ENST00000496723 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
CD46-218ENST00000496723 SENP3Q9H4L4 574 aaPredicted RBP22.13■■□□□ 1.13
CD46-218ENST00000496723 PHF23Q9BUL5 403 aaPredicted RBP21.8■■□□□ 1.08
CD46-218ENST00000496723 FOXD1Q16676 465 aa20.55■□□□□ 0.88
CD46-218ENST00000496723 PLPPR3Q6T4P5 718 aa19.74■□□□□ 0.75
CD46-218ENST00000496723 MSH5O43196 834 aa19.3■□□□□ 0.68
CD46-218ENST00000496723 PIAS4Q8N2W9 510 aaPredicted RBP19.23■□□□□ 0.67
CD46-218ENST00000496723 PPP6R1Q9UPN7 881 aa19.22■□□□□ 0.67
CD46-218ENST00000496723 ADRA2BP18089 450 aa19.16■□□□□ 0.66
CD46-218ENST00000496723 POTEDQ86YR6 584 aa18.69■□□□□ 0.58
CD46-218ENST00000496723 SCAF1Q9H7N4 1312 aaKnown RBP17.67■□□□□ 0.42
CD46-218ENST00000496723 MAPK8IP2Q13387 824 aaPredicted RBP17.57■□□□□ 0.4
CD46-218ENST00000496723 DMRT2Q9Y5R5 561 aa17.53■□□□□ 0.4
CD46-218ENST00000496723 PPP4R3CPQ6ZMV5 832 aa17.26■□□□□ 0.35
CD46-218ENST00000496723 CNKSR2Q8WXI2 1034 aa16.97■□□□□ 0.31
CD46-218ENST00000496723 HOXD11P31277 338 aaPredicted RBP16.92■□□□□ 0.3
CD46-218ENST00000496723 RNF216Q9NWF9 866 aaPredicted RBP16.81■□□□□ 0.28
CD46-218ENST00000496723 DCAF8L1A6NGE4 600 aa16.76■□□□□ 0.27
CD46-218ENST00000496723 NCBP3Q53F19 620 aaKnown RBP16.68■□□□□ 0.26
CD46-218ENST00000496723 CACNB1Q02641 598 aaPredicted RBP16.49■□□□□ 0.23
CD46-218ENST00000496723 RNF39Q9H2S5 420 aa16.44■□□□□ 0.22
CD46-218ENST00000496723 DNAJC5BQ9UF47 199 aa16.42■□□□□ 0.22
CD46-218ENST00000496723 NPM3O75607 178 aaKnown RBP16.35■□□□□ 0.21
CD46-218ENST00000496723 C1QBPQ07021 282 aaKnown RBP16.25■□□□□ 0.19
CD46-218ENST00000496723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.1■□□□□ 0.17
CD46-218ENST00000496723 KCNA4P22459 653 aa16.05■□□□□ 0.16
CD46-218ENST00000496723 U3KPZ7 1027 aaPredicted RBP15.73■□□□□ 0.11
CD46-218ENST00000496723 SLC4A2P04920 1241 aa15.6■□□□□ 0.09
CD46-218ENST00000496723 CAPN15O75808 1086 aa15.48■□□□□ 0.07
CD46-218ENST00000496723 SPINK5Q9NQ38 1064 aaPredicted RBP15.47■□□□□ 0.07
CD46-218ENST00000496723 APLP2Q06481 763 aa15.43■□□□□ 0.06
CD46-218ENST00000496723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.42■□□□□ 0.06
CD46-218ENST00000496723 HNRNPUL2Q1KMD3 747 aaKnown RBP15.42■□□□□ 0.06
CD46-218ENST00000496723 DSG3P32926 999 aa15.39■□□□□ 0.05
CD46-218ENST00000496723 SAMD1Q6SPF0 538 aaPredicted RBP15.3■□□□□ 0.04
CD46-218ENST00000496723 ZNF219Q9P2Y4 722 aaPredicted RBP15.27■□□□□ 0.04
CD46-218ENST00000496723 TRHP20396 242 aaPredicted RBP15.22■□□□□ 0.03
CD46-218ENST00000496723 SLC4A1APQ9BWU0 796 aaKnown RBP15.2■□□□□ 0.02
CD46-218ENST00000496723 MYCNP04198 464 aaPredicted RBP15.17■□□□□ 0.02
CD46-218ENST00000496723 ABCB7O75027 752 aa15.07■□□□□ 0
CD46-218ENST00000496723 FOXD4L1Q9NU39 408 aa15.02■□□□□ -0
CD46-218ENST00000496723 POLA2Q14181 598 aa14.85□□□□□ -0.03
CD46-218ENST00000496723 RBM42Q9BTD8 480 aaKnown RBP14.75□□□□□ -0.05
CD46-218ENST00000496723 ZBTB22O15209 634 aa14.73□□□□□ -0.05
CD46-218ENST00000496723 ATF5Q9Y2D1 282 aaPredicted RBP14.73□□□□□ -0.05
CD46-218ENST00000496723 POTEHQ6S545 545 aa14.67□□□□□ -0.06
CD46-218ENST00000496723 ZBTB12Q9Y330 459 aaPredicted RBP14.64□□□□□ -0.07
CD46-218ENST00000496723 ATXN8OSP0DMR3 200 aa14.63□□□□□ -0.07
CD46-218ENST00000496723 AKT1S1Q96B36 256 aa14.4□□□□□ -0.1
CD46-218ENST00000496723 CHRDL2Q6WN34 429 aa14.36□□□□□ -0.11
CD46-218ENST00000496723 OSCARQ8IYS5 282 aa14.34□□□□□ -0.11
CD46-218ENST00000496723 FBLN2P98095 1184 aa14.26□□□□□ -0.13
CD46-218ENST00000496723 REM2Q8IYK8 340 aaPredicted RBP14.23□□□□□ -0.13
CD46-218ENST00000496723 SPDYE2BA6NHP3 402 aa14.15□□□□□ -0.14
CD46-218ENST00000496723 SPDYE6P0CI01 402 aa14.15□□□□□ -0.14
CD46-218ENST00000496723 SPDYE2Q495Y8 402 aa14.15□□□□□ -0.14
CD46-218ENST00000496723 CSRNP3Q8WYN3 585 aa14.12□□□□□ -0.15
CD46-218ENST00000496723 MKRN4PQ13434 485 aaPredicted RBP14.08□□□□□ -0.16
CD46-218ENST00000496723 PITPNM1O00562 1244 aa14.05□□□□□ -0.16
CD46-218ENST00000496723 PIP4P2Q8N4L2 257 aa14□□□□□ -0.17
CD46-218ENST00000496723 ZNF692Q9BU19 519 aaPredicted RBP13.96□□□□□ -0.17
CD46-218ENST00000496723 FXR2P51116 673 aaKnown RBP eCLIP13.95□□□□□ -0.18
CD46-218ENST00000496723 SSUH2Q9Y2M2 353 aa13.94□□□□□ -0.18
CD46-218ENST00000496723 EHMT2Q96KQ7 1210 aa13.92□□□□□ -0.18
CD46-218ENST00000496723 SPDYE1Q8NFV5 336 aaPredicted RBP13.89□□□□□ -0.19
CD46-218ENST00000496723 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
CD46-218ENST00000496723 SP7Q8TDD2 431 aaPredicted RBP13.78□□□□□ -0.2
CD46-218ENST00000496723 HAX1O00165 279 aa13.76□□□□□ -0.21
CD46-218ENST00000496723 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
CD46-218ENST00000496723 PRKAR2AP13861 404 aaKnown RBP13.7□□□□□ -0.22
CD46-218ENST00000496723 PRR29P0C7W0 189 aa13.63□□□□□ -0.23
CD46-218ENST00000496723 EVX2Q03828 476 aa13.52□□□□□ -0.25
CD46-218ENST00000496723 C19orf67A6NJJ6 358 aa13.5□□□□□ -0.25
CD46-218ENST00000496723 CHADLQ6NUI6 762 aa13.5□□□□□ -0.25
CD46-218ENST00000496723 SPDYE4A6NLX3 237 aa13.47□□□□□ -0.25
CD46-218ENST00000496723 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
CD46-218ENST00000496723 FARP1Q9Y4F1 1045 aaPredicted RBP13.38□□□□□ -0.27
CD46-218ENST00000496723 GABBR2O75899 941 aa13.28□□□□□ -0.28
CD46-218ENST00000496723 CD44P16070 742 aaKnown RBP13.27□□□□□ -0.29
CD46-218ENST00000496723 CREBZFQ9NS37 354 aa13.26□□□□□ -0.29
CD46-218ENST00000496723 CLCN6P51797 869 aa13.23□□□□□ -0.29
CD46-218ENST00000496723 PROM2Q8N271 834 aa13.18□□□□□ -0.3
CD46-218ENST00000496723 NPM1P06748 294 aaKnown RBP eCLIP13.09□□□□□ -0.31
CD46-218ENST00000496723 ZNF579Q8NAF0 562 aaKnown RBP13.09□□□□□ -0.31
CD46-218ENST00000496723 ZRANB1Q9UGI0 708 aa13.08□□□□□ -0.32
CD46-218ENST00000496723 MNX1P50219 401 aaPredicted RBP13.05□□□□□ -0.32
CD46-218ENST00000496723 PAK3O75914 559 aaPredicted RBP13.04□□□□□ -0.32
CD46-218ENST00000496723 POTEIP0CG38 1075 aa12.96□□□□□ -0.33
CD46-218ENST00000496723 DCBLD2Q96PD2 775 aa12.96□□□□□ -0.33
CD46-218ENST00000496723 LHX8Q68G74 356 aa12.93□□□□□ -0.34
CD46-218ENST00000496723 PLEKHG5O94827 1062 aa12.91□□□□□ -0.34
CD46-218ENST00000496723 GALR2O43603 387 aaPredicted RBP12.87□□□□□ -0.35
CD46-218ENST00000496723 PHF12Q96QT6 1004 aa12.87□□□□□ -0.35
CD46-218ENST00000496723 MIER1Q8N108 512 aa12.86□□□□□ -0.35
CD46-218ENST00000496723 FKBP8Q14318 412 aa12.8□□□□□ -0.36
CD46-218ENST00000496723 TSPYL2Q9H2G4 693 aaPredicted RBP12.77□□□□□ -0.37
CD46-218ENST00000496723 PLCD3Q8N3E9 789 aa12.76□□□□□ -0.37
CD46-218ENST00000496723 ZBTB47Q9UFB7 747 aaPredicted RBP12.74□□□□□ -0.37
CD46-218ENST00000496723 CCDC61Q9Y6R9 512 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 338.5 ms