RNA–Protein interactions for RNA: ENST00000495293.5

RBM39-240, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 759 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-240ENST00000495293 AEBP2Q6ZN18 517 aaPredicted RBP25.48■■□□□ 1.67
RBM39-240ENST00000495293 CHIC1Q5VXU3 224 aa24.18■■□□□ 1.46
RBM39-240ENST00000495293 SENP3Q9H4L4 574 aaPredicted RBP21.61■■□□□ 1.05
RBM39-240ENST00000495293 PHF23Q9BUL5 403 aaPredicted RBP21.33■■□□□ 1.01
RBM39-240ENST00000495293 FOXD1Q16676 465 aa20.23■□□□□ 0.83
RBM39-240ENST00000495293 POTEDQ86YR6 584 aa19.65■□□□□ 0.74
RBM39-240ENST00000495293 PLPPR3Q6T4P5 718 aa19.29■□□□□ 0.68
RBM39-240ENST00000495293 MSH5O43196 834 aa19.12■□□□□ 0.65
RBM39-240ENST00000495293 PPP6R1Q9UPN7 881 aa19.02■□□□□ 0.64
RBM39-240ENST00000495293 ADRA2BP18089 450 aa18.92■□□□□ 0.62
RBM39-240ENST00000495293 PIAS4Q8N2W9 510 aaPredicted RBP18.8■□□□□ 0.6
RBM39-240ENST00000495293 MAPK8IP2Q13387 824 aaPredicted RBP17.37■□□□□ 0.37
RBM39-240ENST00000495293 DMRT2Q9Y5R5 561 aa17.13■□□□□ 0.33
RBM39-240ENST00000495293 SCAF1Q9H7N4 1312 aaKnown RBP17.06■□□□□ 0.32
RBM39-240ENST00000495293 PPP4R3CPQ6ZMV5 832 aa16.99■□□□□ 0.31
RBM39-240ENST00000495293 CACNB1Q02641 598 aaPredicted RBP16.74■□□□□ 0.27
RBM39-240ENST00000495293 CNKSR2Q8WXI2 1034 aa16.59■□□□□ 0.25
RBM39-240ENST00000495293 HOXD11P31277 338 aaPredicted RBP16.55■□□□□ 0.24
RBM39-240ENST00000495293 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
RBM39-240ENST00000495293 DCAF8L1A6NGE4 600 aa16.36■□□□□ 0.21
RBM39-240ENST00000495293 RNF39Q9H2S5 420 aa16.29■□□□□ 0.2
RBM39-240ENST00000495293 NCBP3Q53F19 620 aaKnown RBP16.22■□□□□ 0.19
RBM39-240ENST00000495293 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
RBM39-240ENST00000495293 KCNA4P22459 653 aa16.02■□□□□ 0.16
RBM39-240ENST00000495293 C1QBPQ07021 282 aaKnown RBP16■□□□□ 0.15
RBM39-240ENST00000495293 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
RBM39-240ENST00000495293 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.69■□□□□ 0.13e-12■□□□□ 9.6
RBM39-240ENST00000495293 U3KPZ7 1027 aaPredicted RBP15.51■□□□□ 0.07
RBM39-240ENST00000495293 SLC4A2P04920 1241 aa15.48■□□□□ 0.07
RBM39-240ENST00000495293 POTEHQ6S545 545 aa15.28■□□□□ 0.04
RBM39-240ENST00000495293 SPINK5Q9NQ38 1064 aaPredicted RBP15.27■□□□□ 0.04
RBM39-240ENST00000495293 CAPN15O75808 1086 aa15.11■□□□□ 0.01
RBM39-240ENST00000495293 DSG3P32926 999 aa15.07■□□□□ 0
RBM39-240ENST00000495293 SLC4A1APQ9BWU0 796 aaKnown RBP15.04■□□□□ -0
RBM39-240ENST00000495293 TRHP20396 242 aaPredicted RBP14.92□□□□□ -0.02
RBM39-240ENST00000495293 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
RBM39-240ENST00000495293 MYCNP04198 464 aaPredicted RBP14.87□□□□□ -0.03
RBM39-240ENST00000495293 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
RBM39-240ENST00000495293 ABCB7O75027 752 aa14.86□□□□□ -0.03
RBM39-240ENST00000495293 SAMD1Q6SPF0 538 aaPredicted RBP14.85□□□□□ -0.03
RBM39-240ENST00000495293 ZNF219Q9P2Y4 722 aaPredicted RBP14.82□□□□□ -0.04
RBM39-240ENST00000495293 ZBTB22O15209 634 aa14.81□□□□□ -0.04
RBM39-240ENST00000495293 APLP2Q06481 763 aa14.8□□□□□ -0.04
RBM39-240ENST00000495293 FOXD4L1Q9NU39 408 aa14.8□□□□□ -0.04
RBM39-240ENST00000495293 ATF5Q9Y2D1 282 aaPredicted RBP14.71□□□□□ -0.05
RBM39-240ENST00000495293 POLA2Q14181 598 aa14.56□□□□□ -0.08
RBM39-240ENST00000495293 RBM42Q9BTD8 480 aaKnown RBP14.35□□□□□ -0.11
RBM39-240ENST00000495293 ATXN8OSP0DMR3 200 aa14.28□□□□□ -0.12
RBM39-240ENST00000495293 CHRDL2Q6WN34 429 aa14.28□□□□□ -0.12
RBM39-240ENST00000495293 CSRNP3Q8WYN3 585 aa14.17□□□□□ -0.14
RBM39-240ENST00000495293 OSCARQ8IYS5 282 aa14.14□□□□□ -0.15
RBM39-240ENST00000495293 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
RBM39-240ENST00000495293 SP7Q8TDD2 431 aaPredicted RBP14.05□□□□□ -0.16
RBM39-240ENST00000495293 MKRN4PQ13434 485 aaPredicted RBP14.01□□□□□ -0.17
RBM39-240ENST00000495293 EHMT2Q96KQ7 1210 aa14.01□□□□□ -0.17
RBM39-240ENST00000495293 AKT1S1Q96B36 256 aa13.97□□□□□ -0.17
RBM39-240ENST00000495293 REM2Q8IYK8 340 aaPredicted RBP13.91□□□□□ -0.18
RBM39-240ENST00000495293 FBLN2P98095 1184 aa13.86□□□□□ -0.19
RBM39-240ENST00000495293 PIP4P2Q8N4L2 257 aa13.83□□□□□ -0.2
RBM39-240ENST00000495293 PITPNM1O00562 1244 aa13.8□□□□□ -0.2
RBM39-240ENST00000495293 SPDYE2BA6NHP3 402 aa13.78□□□□□ -0.2
RBM39-240ENST00000495293 SPDYE6P0CI01 402 aa13.78□□□□□ -0.2
RBM39-240ENST00000495293 SPDYE2Q495Y8 402 aa13.78□□□□□ -0.2
RBM39-240ENST00000495293 HAX1O00165 279 aa13.7□□□□□ -0.22
RBM39-240ENST00000495293 SSUH2Q9Y2M2 353 aa13.7□□□□□ -0.22
RBM39-240ENST00000495293 FXR2P51116 673 aaKnown RBP eCLIP13.66□□□□□ -0.22
RBM39-240ENST00000495293 ZNF692Q9BU19 519 aaPredicted RBP13.65□□□□□ -0.22
RBM39-240ENST00000495293 EVX2Q03828 476 aa13.54□□□□□ -0.24
RBM39-240ENST00000495293 CLEC11AQ9Y240 323 aa13.51□□□□□ -0.25
RBM39-240ENST00000495293 PABPN1Q86U42 306 aaKnown RBP eCLIP13.5□□□□□ -0.251e-8■□□□□ 10.5
RBM39-240ENST00000495293 SPDYE1Q8NFV5 336 aaPredicted RBP13.49□□□□□ -0.25
RBM39-240ENST00000495293 PRKAR2AP13861 404 aaKnown RBP13.39□□□□□ -0.27
RBM39-240ENST00000495293 CHADLQ6NUI6 762 aa13.34□□□□□ -0.27
RBM39-240ENST00000495293 SPDYE4A6NLX3 237 aa13.28□□□□□ -0.28
RBM39-240ENST00000495293 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
RBM39-240ENST00000495293 C19orf67A6NJJ6 358 aa13.24□□□□□ -0.29
RBM39-240ENST00000495293 GABBR2O75899 941 aa13.18□□□□□ -0.3
RBM39-240ENST00000495293 LHX8Q68G74 356 aa13.17□□□□□ -0.3
RBM39-240ENST00000495293 CREBZFQ9NS37 354 aa13.09□□□□□ -0.31
RBM39-240ENST00000495293 FARP1Q9Y4F1 1045 aaPredicted RBP13.08□□□□□ -0.32
RBM39-240ENST00000495293 PROM2Q8N271 834 aa13.06□□□□□ -0.32
RBM39-240ENST00000495293 STAG3Q9UJ98 1225 aa13.01□□□□□ -0.33
RBM39-240ENST00000495293 CD44P16070 742 aaKnown RBP12.96□□□□□ -0.33
RBM39-240ENST00000495293 MNX1P50219 401 aaPredicted RBP12.93□□□□□ -0.34
RBM39-240ENST00000495293 POTEIP0CG38 1075 aa12.92□□□□□ -0.34
RBM39-240ENST00000495293 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
RBM39-240ENST00000495293 FKBP8Q14318 412 aa12.78□□□□□ -0.36
RBM39-240ENST00000495293 ZNF579Q8NAF0 562 aaKnown RBP12.78□□□□□ -0.36
RBM39-240ENST00000495293 PLSCR2Q9NRY7 297 aa12.77□□□□□ -0.37
RBM39-240ENST00000495293 CLCN6P51797 869 aa12.76□□□□□ -0.37
RBM39-240ENST00000495293 PHF12Q96QT6 1004 aa12.71□□□□□ -0.37
RBM39-240ENST00000495293 GALR2O43603 387 aaPredicted RBP12.69□□□□□ -0.38
RBM39-240ENST00000495293 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
RBM39-240ENST00000495293 DCBLD2Q96PD2 775 aa12.67□□□□□ -0.38
RBM39-240ENST00000495293 MIER1Q8N108 512 aa12.61□□□□□ -0.39
RBM39-240ENST00000495293 PAK3O75914 559 aaPredicted RBP12.58□□□□□ -0.4
RBM39-240ENST00000495293 TSPYL2Q9H2G4 693 aaPredicted RBP12.58□□□□□ -0.4
RBM39-240ENST00000495293 RASEFQ8IZ41 740 aa12.56□□□□□ -0.4
RBM39-240ENST00000495293 OTUD5Q96G74 571 aa12.55□□□□□ -0.4
RBM39-240ENST00000495293 CCDC61Q9Y6R9 512 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms