RNA–Protein interactions for RNA: ENST00000489898.1

SRSF4-204, Transcript of serine and arginine rich splicing factor 4, humanhuman

TSL 3

Gene SRSF4, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF4-204ENST00000489898 NISCHQ9Y2I1 1504 aa30.17■■■□□ 2.42
SRSF4-204ENST00000489898 CCDC180Q9P1Z9 1646 aa27.17■■□□□ 1.94
SRSF4-204ENST00000489898 ABCC9O60706 1549 aa26.6■■□□□ 1.85
SRSF4-204ENST00000489898 RB1CC1Q8TDY2 1594 aa25.52■■□□□ 1.68
SRSF4-204ENST00000489898 NACADO15069 1562 aa25.42■■□□□ 1.66
SRSF4-204ENST00000489898 UNC13AQ9UPW8 1703 aa25.34■■□□□ 1.65
SRSF4-204ENST00000489898 MYO15BQ96JP2 1530 aa25.24■■□□□ 1.63
SRSF4-204ENST00000489898 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
SRSF4-204ENST00000489898 DCAF1Q9Y4B6 1507 aa25.02■■□□□ 1.6
SRSF4-204ENST00000489898 BICRAQ9NZM4 1560 aa25■■□□□ 1.59
SRSF4-204ENST00000489898 DCAF8L2P0C7V8 631 aa24.72■■□□□ 1.55
SRSF4-204ENST00000489898 DNAJC5BQ9UF47 199 aa24.71■■□□□ 1.55
SRSF4-204ENST00000489898 SCRIBQ14160 1630 aa24.63■■□□□ 1.53
SRSF4-204ENST00000489898 PABPN1Q86U42 306 aaKnown RBP eCLIP24.6■■□□□ 1.53
SRSF4-204ENST00000489898 SHROOM4Q9ULL8 1493 aa24.54■■□□□ 1.52
SRSF4-204ENST00000489898 EIF4G1Q04637 1599 aaKnown RBP24.22■■□□□ 1.47
SRSF4-204ENST00000489898 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
SRSF4-204ENST00000489898 CECR2Q9BXF3 1484 aa23.93■■□□□ 1.42
SRSF4-204ENST00000489898 SMARCA4P51532 1647 aa23.59■■□□□ 1.37
SRSF4-204ENST00000489898 PEG3Q9GZU2 1588 aa23.42■■□□□ 1.34
SRSF4-204ENST00000489898 NCAPD3P42695 1498 aa23.42■■□□□ 1.34
SRSF4-204ENST00000489898 HMGXB3Q12766 1538 aa23.41■■□□□ 1.34
SRSF4-204ENST00000489898 ATAD2BQ9ULI0 1458 aa23.41■■□□□ 1.34
SRSF4-204ENST00000489898 BAZ1AQ9NRL2 1556 aaPredicted RBP23.38■■□□□ 1.33
SRSF4-204ENST00000489898 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
SRSF4-204ENST00000489898 MROH2BQ7Z745 1585 aa23.28■■□□□ 1.32
SRSF4-204ENST00000489898 BAZ1BQ9UIG0 1483 aaKnown RBP23.12■■□□□ 1.29
SRSF4-204ENST00000489898 WIZO95785 1651 aa23.08■■□□□ 1.29
SRSF4-204ENST00000489898 NESP48681 1621 aa23.03■■□□□ 1.28
SRSF4-204ENST00000489898 THOC2Q8NI27 1593 aaKnown RBP22.96■■□□□ 1.27
SRSF4-204ENST00000489898 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
SRSF4-204ENST00000489898 LAMC3Q9Y6N6 1575 aa22.93■■□□□ 1.26
SRSF4-204ENST00000489898 CUX2O14529 1486 aa22.86■■□□□ 1.25
SRSF4-204ENST00000489898 ERCC6Q03468 1493 aa22.81■■□□□ 1.24
SRSF4-204ENST00000489898 RSF1Q96T23 1441 aaPredicted RBP22.79■■□□□ 1.24
SRSF4-204ENST00000489898 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
SRSF4-204ENST00000489898 PRDM2Q13029 1718 aa22.67■■□□□ 1.22
SRSF4-204ENST00000489898 CADPSQ9ULU8 1353 aa22.6■■□□□ 1.21
SRSF4-204ENST00000489898 WDR62O43379 1518 aa22.57■■□□□ 1.2
SRSF4-204ENST00000489898 PDS5BQ9NTI5 1447 aa22.54■■□□□ 1.2
SRSF4-204ENST00000489898 CFTRP13569 1480 aa22.54■■□□□ 1.2
SRSF4-204ENST00000489898 MRC2Q9UBG0 1479 aa22.49■■□□□ 1.19
SRSF4-204ENST00000489898 FANCD2Q9BXW9 1451 aa22.42■■□□□ 1.18
SRSF4-204ENST00000489898 CEP164Q9UPV0 1460 aa22.42■■□□□ 1.18
SRSF4-204ENST00000489898 CCDC88BA6NC98 1476 aa22.39■■□□□ 1.17
SRSF4-204ENST00000489898 DNAJC5Q9H3Z4 198 aa22.36■■□□□ 1.17
SRSF4-204ENST00000489898 URB2Q14146 1524 aaKnown RBP22.35■■□□□ 1.17
SRSF4-204ENST00000489898 TOPBP1Q92547 1522 aa22.1■■□□□ 1.13
SRSF4-204ENST00000489898 DNMBPQ6XZF7 1577 aa22.09■■□□□ 1.13
SRSF4-204ENST00000489898 TARBP1Q13395 1621 aaKnown RBP22.05■■□□□ 1.12
SRSF4-204ENST00000489898 EIF4G3O43432 1585 aaKnown RBP22.02■■□□□ 1.12
SRSF4-204ENST00000489898 ZNF608Q9ULD9 1512 aaPredicted RBP22■■□□□ 1.11
SRSF4-204ENST00000489898 IFT140Q96RY7 1462 aa21.95■■□□□ 1.1
SRSF4-204ENST00000489898 WDR97A6NE52 1622 aa21.94■■□□□ 1.1
SRSF4-204ENST00000489898 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
SRSF4-204ENST00000489898 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
SRSF4-204ENST00000489898 CUX1P39880 1505 aa21.88■■□□□ 1.09
SRSF4-204ENST00000489898 CHD1O14646 1710 aa21.86■■□□□ 1.09
SRSF4-204ENST00000489898 FGD5Q6ZNL6 1462 aa21.77■■□□□ 1.07
SRSF4-204ENST00000489898 RAD54L2Q9Y4B4 1467 aa21.75■■□□□ 1.07
SRSF4-204ENST00000489898 BIVM-ERCC5R4GMW8 1640 aa21.71■■□□□ 1.07
SRSF4-204ENST00000489898 PBRM1Q86U86 1689 aa21.71■■□□□ 1.07
SRSF4-204ENST00000489898 AQRO60306 1485 aaKnown RBP eCLIP21.69■■□□□ 1.062e-8■■■□□ 16.4
SRSF4-204ENST00000489898 RIMBP3CA6NJZ7 1639 aa21.69■■□□□ 1.06
SRSF4-204ENST00000489898 RIMBP3BA6NNM3 1639 aa21.69■■□□□ 1.06
SRSF4-204ENST00000489898 ABCA5Q8WWZ7 1642 aa21.69■■□□□ 1.06
SRSF4-204ENST00000489898 RIMBP3Q9UFD9 1639 aa21.69■■□□□ 1.06
SRSF4-204ENST00000489898 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
SRSF4-204ENST00000489898 TOP2BQ02880 1626 aa21.61■■□□□ 1.05
SRSF4-204ENST00000489898 SOGA1O94964 1423 aa21.59■■□□□ 1.05
SRSF4-204ENST00000489898 CLASP1Q7Z460 1538 aa21.57■■□□□ 1.04
SRSF4-204ENST00000489898 SNAPC4Q5SXM2 1469 aa21.57■■□□□ 1.04
SRSF4-204ENST00000489898 ARHGEF11O15085 1522 aa21.56■■□□□ 1.04
SRSF4-204ENST00000489898 ABCA10Q8WWZ4 1543 aa21.56■■□□□ 1.04
SRSF4-204ENST00000489898 SUPT5HO00267 1087 aaKnown RBP21.56■■□□□ 1.04
SRSF4-204ENST00000489898 TDRD9Q8NDG6 1382 aaKnown RBP21.52■■□□□ 1.04
SRSF4-204ENST00000489898 OSCARQ8IYS5 282 aa21.52■■□□□ 1.04
SRSF4-204ENST00000489898 MAGI1Q96QZ7 1491 aaPredicted RBP21.51■■□□□ 1.03
SRSF4-204ENST00000489898 GRIN2BQ13224 1484 aa21.46■■□□□ 1.03
SRSF4-204ENST00000489898 ADAMTS12P58397 1594 aa21.46■■□□□ 1.03
SRSF4-204ENST00000489898 WRNQ14191 1432 aaPredicted RBP eCLIP21.42■■□□□ 1.02
SRSF4-204ENST00000489898 GAPVD1Q14C86 1478 aa21.42■■□□□ 1.02
SRSF4-204ENST00000489898 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
SRSF4-204ENST00000489898 ARAP1Q96P48 1450 aa21.4■■□□□ 1.02
SRSF4-204ENST00000489898 CEP170Q5SW79 1584 aa21.31■■□□□ 1
SRSF4-204ENST00000489898 TRIM41Q8WV44 630 aa21.31■■□□□ 1
SRSF4-204ENST00000489898 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
SRSF4-204ENST00000489898 SHROOM2Q13796 1616 aa21.29■■□□□ 1
SRSF4-204ENST00000489898 GRIN2AQ12879 1464 aa21.27■■□□□ 1
SRSF4-204ENST00000489898 ERCC6L2Q5T890 1561 aa21.24■□□□□ 0.99
SRSF4-204ENST00000489898 NUP160Q12769 1436 aa21.23■□□□□ 0.99
SRSF4-204ENST00000489898 RUSC2Q8N2Y8 1516 aa21.19■□□□□ 0.98
SRSF4-204ENST00000489898 FBLN2P98095 1184 aa21.15■□□□□ 0.98
SRSF4-204ENST00000489898 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
SRSF4-204ENST00000489898 CUL7Q14999 1698 aa21.11■□□□□ 0.97
SRSF4-204ENST00000489898 CHMP7Q8WUX9 453 aaPredicted RBP21.09■□□□□ 0.97
SRSF4-204ENST00000489898 CYB5RLQ6IPT4 315 aa21■□□□□ 0.95
SRSF4-204ENST00000489898 IGF1RP08069 1367 aa20.92■□□□□ 0.94
SRSF4-204ENST00000489898 KIF27Q86VH2 1401 aa20.91■□□□□ 0.94
SRSF4-204ENST00000489898 KIF13AQ9H1H9 1805 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms