RNA–Protein interactions for RNA: ENST00000416108.5

RBM39-208, Transcript of RNA binding motif protein 39, humanhuman

TSL 4

Gene RBM39, Length 577 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-208ENST00000416108 NISCHQ9Y2I1 1504 aa19.56■□□□□ 0.72
RBM39-208ENST00000416108 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
RBM39-208ENST00000416108 ABCC9O60706 1549 aa16.49■□□□□ 0.23
RBM39-208ENST00000416108 ZCCHC6Q5VYS8 1495 aaKnown RBP16.38■□□□□ 0.21
RBM39-208ENST00000416108 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
RBM39-208ENST00000416108 DCAF1Q9Y4B6 1507 aa16.2■□□□□ 0.18
RBM39-208ENST00000416108 NACADO15069 1562 aa16.13■□□□□ 0.17
RBM39-208ENST00000416108 MYO15BQ96JP2 1530 aa16.11■□□□□ 0.17
RBM39-208ENST00000416108 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
RBM39-208ENST00000416108 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
RBM39-208ENST00000416108 UNC13AQ9UPW8 1703 aa15.8■□□□□ 0.12
RBM39-208ENST00000416108 SHROOM4Q9ULL8 1493 aa15.71■□□□□ 0.11
RBM39-208ENST00000416108 BICRAQ9NZM4 1560 aa15.51■□□□□ 0.07
RBM39-208ENST00000416108 PABPN1Q86U42 306 aaKnown RBP eCLIP15.42■□□□□ 0.06
RBM39-208ENST00000416108 BAZ1AQ9NRL2 1556 aaPredicted RBP15.18■□□□□ 0.02
RBM39-208ENST00000416108 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
RBM39-208ENST00000416108 SMARCA4P51532 1647 aa15.14■□□□□ 0.01
RBM39-208ENST00000416108 EIF4G1Q04637 1599 aaKnown RBP15.11■□□□□ 0.01
RBM39-208ENST00000416108 MROH2BQ7Z745 1585 aa15.07■□□□□ 0
RBM39-208ENST00000416108 RSF1Q96T23 1441 aaPredicted RBP15.01□□□□□ -0.01
RBM39-208ENST00000416108 WIZO95785 1651 aa15□□□□□ -0.01
RBM39-208ENST00000416108 SUPT5HO00267 1087 aaKnown RBP14.98□□□□□ -0.01
RBM39-208ENST00000416108 SMARCA2P51531 1590 aa14.96□□□□□ -0.01
RBM39-208ENST00000416108 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
RBM39-208ENST00000416108 PEG3Q9GZU2 1588 aa14.94□□□□□ -0.02
RBM39-208ENST00000416108 ATAD2BQ9ULI0 1458 aa14.89□□□□□ -0.03
RBM39-208ENST00000416108 BAZ1BQ9UIG0 1483 aaKnown RBP14.85□□□□□ -0.03
RBM39-208ENST00000416108 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
RBM39-208ENST00000416108 HMGXB3Q12766 1538 aa14.84□□□□□ -0.03
RBM39-208ENST00000416108 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
RBM39-208ENST00000416108 DNAJC5BQ9UF47 199 aa14.63□□□□□ -0.07
RBM39-208ENST00000416108 CCDC88BA6NC98 1476 aa14.62□□□□□ -0.07
RBM39-208ENST00000416108 PRDM2Q13029 1718 aa14.55□□□□□ -0.08
RBM39-208ENST00000416108 LAMC3Q9Y6N6 1575 aa14.45□□□□□ -0.1
RBM39-208ENST00000416108 CADPSQ9ULU8 1353 aa14.41□□□□□ -0.1
RBM39-208ENST00000416108 CFTRP13569 1480 aa14.4□□□□□ -0.1
RBM39-208ENST00000416108 NESP48681 1621 aa14.36□□□□□ -0.11
RBM39-208ENST00000416108 KIF21AQ7Z4S6 1674 aa14.31□□□□□ -0.12
RBM39-208ENST00000416108 PDS5BQ9NTI5 1447 aa14.3□□□□□ -0.12
RBM39-208ENST00000416108 FANCD2Q9BXW9 1451 aa14.28□□□□□ -0.12
RBM39-208ENST00000416108 ABCC8Q09428 1581 aa14.26□□□□□ -0.13
RBM39-208ENST00000416108 CEP164Q9UPV0 1460 aa14.25□□□□□ -0.13
RBM39-208ENST00000416108 ERCC6Q03468 1493 aa14.23□□□□□ -0.13
RBM39-208ENST00000416108 WRNQ14191 1432 aaPredicted RBP eCLIP14.2□□□□□ -0.14
RBM39-208ENST00000416108 BIVM-ERCC5R4GMW8 1640 aa14.18□□□□□ -0.14
RBM39-208ENST00000416108 CHIC1Q5VXU3 224 aa14.17□□□□□ -0.14
RBM39-208ENST00000416108 TOP2BQ02880 1626 aa14.15□□□□□ -0.14
RBM39-208ENST00000416108 SYNJ1O43426 1573 aa14.15□□□□□ -0.14
RBM39-208ENST00000416108 DNMBPQ6XZF7 1577 aa14.15□□□□□ -0.14
RBM39-208ENST00000416108 MRC2Q9UBG0 1479 aa14.14□□□□□ -0.15
RBM39-208ENST00000416108 TRIM41Q8WV44 630 aa14.14□□□□□ -0.15
RBM39-208ENST00000416108 CUX1P39880 1505 aa14.13□□□□□ -0.15
RBM39-208ENST00000416108 THOC2Q8NI27 1593 aaKnown RBP14.11□□□□□ -0.15
RBM39-208ENST00000416108 TOPBP1Q92547 1522 aa14.1□□□□□ -0.15
RBM39-208ENST00000416108 URB2Q14146 1524 aaKnown RBP14.09□□□□□ -0.15
RBM39-208ENST00000416108 WDR62O43379 1518 aa14.07□□□□□ -0.16
RBM39-208ENST00000416108 FGD5Q6ZNL6 1462 aa14.04□□□□□ -0.16
RBM39-208ENST00000416108 POLA1P09884 1462 aaPredicted RBP13.99□□□□□ -0.17
RBM39-208ENST00000416108 WDR97A6NE52 1622 aa13.97□□□□□ -0.17
RBM39-208ENST00000416108 SOGA1O94964 1423 aa13.95□□□□□ -0.18
RBM39-208ENST00000416108 TARBP1Q13395 1621 aaKnown RBP13.92□□□□□ -0.18
RBM39-208ENST00000416108 IFT140Q96RY7 1462 aa13.92□□□□□ -0.18
RBM39-208ENST00000416108 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
RBM39-208ENST00000416108 ABCA10Q8WWZ4 1543 aa13.9□□□□□ -0.18
RBM39-208ENST00000416108 CUX2O14529 1486 aa13.9□□□□□ -0.18
RBM39-208ENST00000416108 EEA1Q15075 1411 aa13.9□□□□□ -0.19
RBM39-208ENST00000416108 KIF27Q86VH2 1401 aa13.89□□□□□ -0.19
RBM39-208ENST00000416108 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
RBM39-208ENST00000416108 ABCA5Q8WWZ7 1642 aa13.86□□□□□ -0.19
RBM39-208ENST00000416108 FAM9AQ8IZU1 332 aaPredicted RBP13.84□□□□□ -0.19
RBM39-208ENST00000416108 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.19
RBM39-208ENST00000416108 RUSC2Q8N2Y8 1516 aa13.83□□□□□ -0.2
RBM39-208ENST00000416108 GAPVD1Q14C86 1478 aa13.8□□□□□ -0.2
RBM39-208ENST00000416108 CUL7Q14999 1698 aa13.79□□□□□ -0.2
RBM39-208ENST00000416108 TDRD9Q8NDG6 1382 aaKnown RBP13.79□□□□□ -0.2
RBM39-208ENST00000416108 ZNF608Q9ULD9 1512 aaPredicted RBP13.78□□□□□ -0.2
RBM39-208ENST00000416108 ERICH3Q5RHP9 1530 aa13.77□□□□□ -0.21
RBM39-208ENST00000416108 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
RBM39-208ENST00000416108 KIF21BO75037 1637 aa13.75□□□□□ -0.21
RBM39-208ENST00000416108 AQRO60306 1485 aaKnown RBP eCLIP13.75□□□□□ -0.211e-12■■■■□ 23.9
RBM39-208ENST00000416108 GRIN2BQ13224 1484 aa13.74□□□□□ -0.21
RBM39-208ENST00000416108 ADAMTS12P58397 1594 aa13.71□□□□□ -0.21
RBM39-208ENST00000416108 IGF1RP08069 1367 aa13.7□□□□□ -0.22
RBM39-208ENST00000416108 GOLGA3Q08378 1498 aa13.68□□□□□ -0.22
RBM39-208ENST00000416108 SNAPC4Q5SXM2 1469 aa13.68□□□□□ -0.22
RBM39-208ENST00000416108 MAGI1Q96QZ7 1491 aaPredicted RBP13.68□□□□□ -0.22
RBM39-208ENST00000416108 CARMIL1Q5VZK9 1371 aa13.68□□□□□ -0.22
RBM39-208ENST00000416108 PRXQ9BXM0 1461 aa13.67□□□□□ -0.22
RBM39-208ENST00000416108 RAPGEF2Q9Y4G8 1499 aa13.67□□□□□ -0.22
RBM39-208ENST00000416108 FHAD1B1AJZ9 1412 aa13.65□□□□□ -0.22
RBM39-208ENST00000416108 CTTNBP2Q8WZ74 1663 aa13.65□□□□□ -0.22
RBM39-208ENST00000416108 CHD1O14646 1710 aa13.64□□□□□ -0.23
RBM39-208ENST00000416108 EHMT2Q96KQ7 1210 aa13.64□□□□□ -0.23
RBM39-208ENST00000416108 SYNJ2O15056 1496 aa13.61□□□□□ -0.23
RBM39-208ENST00000416108 UBTFP17480 764 aaKnown RBP13.6□□□□□ -0.23
RBM39-208ENST00000416108 LOC105371045A0A1W2PR82 267 aa13.58□□□□□ -0.24
RBM39-208ENST00000416108 GRIN2AQ12879 1464 aa13.58□□□□□ -0.24
RBM39-208ENST00000416108 CHMP7Q8WUX9 453 aaPredicted RBP13.57□□□□□ -0.24
RBM39-208ENST00000416108 FBLN2P98095 1184 aa13.56□□□□□ -0.24
RBM39-208ENST00000416108 TNIKQ9UKE5 1360 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms