Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.93■■□□□ 1.58
SHANK1Q9Y566 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SHANK1Q9Y566 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SHANK1Q9Y566 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.9■■□□□ 1.58
SHANK1Q9Y566 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SHANK1Q9Y566 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.9■■□□□ 1.58
SHANK1Q9Y566 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SHANK1Q9Y566 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.87■■□□□ 1.57
SHANK1Q9Y566 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC24.87■■□□□ 1.57
SHANK1Q9Y566 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SHANK1Q9Y566 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SHANK1Q9Y566 ZNRF2P2-203ENST00000454624 420 ntBASIC24.85■■□□□ 1.57
SHANK1Q9Y566 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK1Q9Y566 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.84■■□□□ 1.57
SHANK1Q9Y566 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
SHANK1Q9Y566 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.82■■□□□ 1.56
SHANK1Q9Y566 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SHANK1Q9Y566 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
SHANK1Q9Y566 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK1Q9Y566 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.81■■□□□ 1.56
SHANK1Q9Y566 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
SHANK1Q9Y566 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK1Q9Y566 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC24.8■■□□□ 1.56
SHANK1Q9Y566 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK1Q9Y566 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.79■■□□□ 1.56
SHANK1Q9Y566 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHANK1Q9Y566 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
SHANK1Q9Y566 MIR4449-201ENST00000578365 66 ntBASIC24.78■■□□□ 1.56
SHANK1Q9Y566 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHANK1Q9Y566 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
SHANK1Q9Y566 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
SHANK1Q9Y566 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.77■■□□□ 1.56
SHANK1Q9Y566 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SHANK1Q9Y566 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SHANK1Q9Y566 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SHANK1Q9Y566 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
SHANK1Q9Y566 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SHANK1Q9Y566 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.74■■□□□ 1.55
SHANK1Q9Y566 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SHANK1Q9Y566 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.73■■□□□ 1.55
SHANK1Q9Y566 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHANK1Q9Y566 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC24.72■■□□□ 1.55
SHANK1Q9Y566 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SHANK1Q9Y566 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
SHANK1Q9Y566 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SHANK1Q9Y566 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SHANK1Q9Y566 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
SHANK1Q9Y566 WASH5P-204ENST00000632292 975 ntBASIC24.68■■□□□ 1.54
SHANK1Q9Y566 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
SHANK1Q9Y566 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SHANK1Q9Y566 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SHANK1Q9Y566 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SHANK1Q9Y566 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SHANK1Q9Y566 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.65■■□□□ 1.54
SHANK1Q9Y566 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SHANK1Q9Y566 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.64■■□□□ 1.54
SHANK1Q9Y566 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SHANK1Q9Y566 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SHANK1Q9Y566 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.61■■□□□ 1.53
SHANK1Q9Y566 DUX4L29-201ENST00000425409 679 ntBASIC24.61■■□□□ 1.53
SHANK1Q9Y566 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.61■■□□□ 1.53
SHANK1Q9Y566 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
SHANK1Q9Y566 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SHANK1Q9Y566 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SHANK1Q9Y566 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SHANK1Q9Y566 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SHANK1Q9Y566 MIR639-201ENST00000384974 98 ntBASIC24.59■■□□□ 1.53
SHANK1Q9Y566 MIR3648-2-201ENST00000581792 180 ntBASIC24.55■■□□□ 1.52
SHANK1Q9Y566 MIR3648-1-201ENST00000615959 180 ntBASIC24.55■■□□□ 1.52
SHANK1Q9Y566 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.54■■□□□ 1.52
SHANK1Q9Y566 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHANK1Q9Y566 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
SHANK1Q9Y566 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHANK1Q9Y566 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC24.54■■□□□ 1.52
SHANK1Q9Y566 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.53■■□□□ 1.52
SHANK1Q9Y566 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SHANK1Q9Y566 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SHANK1Q9Y566 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SHANK1Q9Y566 AC016575.1-201ENST00000607026 382 ntBASIC24.53■■□□□ 1.52
SHANK1Q9Y566 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SHANK1Q9Y566 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SHANK1Q9Y566 HSD17B1P1-201ENST00000590052 955 ntBASIC24.52■■□□□ 1.52
SHANK1Q9Y566 AC021231.2-201ENST00000594613 730 ntBASIC24.52■■□□□ 1.52
SHANK1Q9Y566 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.52■■□□□ 1.52
SHANK1Q9Y566 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC24.51■■□□□ 1.51
SHANK1Q9Y566 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
SHANK1Q9Y566 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
SHANK1Q9Y566 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
SHANK1Q9Y566 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.49■■□□□ 1.51
SHANK1Q9Y566 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.48■■□□□ 1.51
SHANK1Q9Y566 CR559946.2-201ENST00000623684 991 ntBASIC24.48■■□□□ 1.51
SHANK1Q9Y566 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.48■■□□□ 1.51
SHANK1Q9Y566 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SHANK1Q9Y566 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SHANK1Q9Y566 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.46■■□□□ 1.51
SHANK1Q9Y566 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
SHANK1Q9Y566 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SHANK1Q9Y566 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SHANK1Q9Y566 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SHANK1Q9Y566 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms