Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
NKX2-3Q8TAU0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.44■■■□□ 2.78
NKX2-3Q8TAU0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.41■■■□□ 2.78
NKX2-3Q8TAU0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.41■■■□□ 2.78
NKX2-3Q8TAU0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
NKX2-3Q8TAU0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
NKX2-3Q8TAU0 AC120057.4-201ENST00000624722 1615 ntBASIC32.38■■■□□ 2.77
NKX2-3Q8TAU0 ABHD17AP4-201ENST00000411545 909 ntBASIC32.38■■■□□ 2.77
NKX2-3Q8TAU0 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
NKX2-3Q8TAU0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
NKX2-3Q8TAU0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
NKX2-3Q8TAU0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
NKX2-3Q8TAU0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.34■■■□□ 2.77
NKX2-3Q8TAU0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
NKX2-3Q8TAU0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
NKX2-3Q8TAU0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
NKX2-3Q8TAU0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC32.33■■■□□ 2.77
NKX2-3Q8TAU0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.31■■■□□ 2.76
NKX2-3Q8TAU0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
NKX2-3Q8TAU0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
NKX2-3Q8TAU0 AL391121.1-201ENST00000607967 1349 ntBASIC32.29■■■□□ 2.76
NKX2-3Q8TAU0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
NKX2-3Q8TAU0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
NKX2-3Q8TAU0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC32.29■■■□□ 2.76
NKX2-3Q8TAU0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
NKX2-3Q8TAU0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.29■■■□□ 2.76
NKX2-3Q8TAU0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.28■■■□□ 2.76
NKX2-3Q8TAU0 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.28■■■□□ 2.76
NKX2-3Q8TAU0 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
NKX2-3Q8TAU0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.26■■■□□ 2.76
NKX2-3Q8TAU0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
NKX2-3Q8TAU0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.26■■■□□ 2.76
NKX2-3Q8TAU0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
NKX2-3Q8TAU0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC32.25■■■□□ 2.75
NKX2-3Q8TAU0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
NKX2-3Q8TAU0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
NKX2-3Q8TAU0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
NKX2-3Q8TAU0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
NKX2-3Q8TAU0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.23■■■□□ 2.75
NKX2-3Q8TAU0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32.23■■■□□ 2.75
NKX2-3Q8TAU0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
NKX2-3Q8TAU0 MIR3665-201ENST00000578708 105 ntBASIC32.21■■■□□ 2.75
NKX2-3Q8TAU0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.2■■■□□ 2.75
NKX2-3Q8TAU0 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
NKX2-3Q8TAU0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.19■■■□□ 2.74
NKX2-3Q8TAU0 HLA-V-202ENST00000446817 847 ntBASIC32.18■■■□□ 2.74
NKX2-3Q8TAU0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
NKX2-3Q8TAU0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.17■■■□□ 2.74
NKX2-3Q8TAU0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
NKX2-3Q8TAU0 WASH5P-204ENST00000632292 975 ntBASIC32.16■■■□□ 2.74
NKX2-3Q8TAU0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
NKX2-3Q8TAU0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
NKX2-3Q8TAU0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
NKX2-3Q8TAU0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
NKX2-3Q8TAU0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
NKX2-3Q8TAU0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.14■■■□□ 2.74
NKX2-3Q8TAU0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
NKX2-3Q8TAU0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.11■■■□□ 2.73
NKX2-3Q8TAU0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
NKX2-3Q8TAU0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
NKX2-3Q8TAU0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.09■■■□□ 2.73
NKX2-3Q8TAU0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.09■■■□□ 2.73
NKX2-3Q8TAU0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
NKX2-3Q8TAU0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
NKX2-3Q8TAU0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
NKX2-3Q8TAU0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.07■■■□□ 2.73
NKX2-3Q8TAU0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
NKX2-3Q8TAU0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
NKX2-3Q8TAU0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
NKX2-3Q8TAU0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.06■■■□□ 2.72
NKX2-3Q8TAU0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
NKX2-3Q8TAU0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
NKX2-3Q8TAU0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
NKX2-3Q8TAU0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NKX2-3Q8TAU0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC32.01■■■□□ 2.72
NKX2-3Q8TAU0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
NKX2-3Q8TAU0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.01■■■□□ 2.71
NKX2-3Q8TAU0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
NKX2-3Q8TAU0 AC087741.3-201ENST00000624270 1347 ntBASIC32■■■□□ 2.71
NKX2-3Q8TAU0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32■■■□□ 2.71
NKX2-3Q8TAU0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32■■■□□ 2.71
NKX2-3Q8TAU0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC32■■■□□ 2.71
NKX2-3Q8TAU0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32■■■□□ 2.71
NKX2-3Q8TAU0 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
NKX2-3Q8TAU0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
NKX2-3Q8TAU0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.97■■■□□ 2.71
NKX2-3Q8TAU0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
NKX2-3Q8TAU0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
NKX2-3Q8TAU0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
NKX2-3Q8TAU0 AC044849.2-201ENST00000606596 710 ntBASIC31.95■■■□□ 2.71
NKX2-3Q8TAU0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NKX2-3Q8TAU0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.94■■■□□ 2.7
NKX2-3Q8TAU0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
NKX2-3Q8TAU0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NKX2-3Q8TAU0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
NKX2-3Q8TAU0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.86■■■□□ 2.69
NKX2-3Q8TAU0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
NKX2-3Q8TAU0 DUX4L28-201ENST00000623687 678 ntBASIC31.86■■■□□ 2.69
NKX2-3Q8TAU0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.84■■■□□ 2.69
NKX2-3Q8TAU0 AL161658.1-201ENST00000623641 1967 ntBASIC31.84■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms