Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC35.32■■■■□ 3.24
RC3H1Q5TC82 WASH5P-204ENST00000632292 975 ntBASIC35.31■■■■□ 3.24
RC3H1Q5TC82 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
RC3H1Q5TC82 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC35.29■■■■□ 3.24
RC3H1Q5TC82 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
RC3H1Q5TC82 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC35.27■■■■□ 3.24
RC3H1Q5TC82 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC35.27■■■■□ 3.24
RC3H1Q5TC82 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC35.26■■■■□ 3.23
RC3H1Q5TC82 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
RC3H1Q5TC82 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC35.23■■■■□ 3.23
RC3H1Q5TC82 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
RC3H1Q5TC82 HGH1-207ENST00000628266 258 ntTSL 5 BASIC35.2■■■■□ 3.23
RC3H1Q5TC82 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.19■■■■□ 3.22
RC3H1Q5TC82 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
RC3H1Q5TC82 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC35.18■■■■□ 3.22
RC3H1Q5TC82 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
RC3H1Q5TC82 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
RC3H1Q5TC82 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC35.17■■■■□ 3.22
RC3H1Q5TC82 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC35.16■■■■□ 3.22
RC3H1Q5TC82 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC35.16■■■■□ 3.22
RC3H1Q5TC82 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
RC3H1Q5TC82 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC35.14■■■■□ 3.22
RC3H1Q5TC82 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
RC3H1Q5TC82 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
RC3H1Q5TC82 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
RC3H1Q5TC82 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC35.09■■■■□ 3.21
RC3H1Q5TC82 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC35.09■■■■□ 3.21
RC3H1Q5TC82 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
RC3H1Q5TC82 RPS2-209ENST00000529806 993 ntTSL 3 BASIC35.07■■■■□ 3.2
RC3H1Q5TC82 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC35.06■■■■□ 3.2
RC3H1Q5TC82 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC35.06■■■■□ 3.2
RC3H1Q5TC82 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
RC3H1Q5TC82 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
RC3H1Q5TC82 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC35.01■■■■□ 3.2
RC3H1Q5TC82 DUX4L29-201ENST00000425409 679 ntBASIC35.01■■■■□ 3.2
RC3H1Q5TC82 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC35.01■■■■□ 3.2
RC3H1Q5TC82 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
RC3H1Q5TC82 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
RC3H1Q5TC82 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
RC3H1Q5TC82 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.96■■■■□ 3.19
RC3H1Q5TC82 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
RC3H1Q5TC82 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
RC3H1Q5TC82 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.95■■■■□ 3.19
RC3H1Q5TC82 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.18
RC3H1Q5TC82 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RC3H1Q5TC82 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RC3H1Q5TC82 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
RC3H1Q5TC82 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.92■■■■□ 3.18
RC3H1Q5TC82 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
RC3H1Q5TC82 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
RC3H1Q5TC82 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.9■■■■□ 3.18
RC3H1Q5TC82 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC34.88■■■■□ 3.17
RC3H1Q5TC82 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
RC3H1Q5TC82 MIR4449-201ENST00000578365 66 ntBASIC34.88■■■■□ 3.17
RC3H1Q5TC82 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC34.88■■■■□ 3.17
RC3H1Q5TC82 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC34.87■■■■□ 3.17
RC3H1Q5TC82 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
RC3H1Q5TC82 AC021231.2-201ENST00000594613 730 ntBASIC34.87■■■■□ 3.17
RC3H1Q5TC82 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
RC3H1Q5TC82 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
RC3H1Q5TC82 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.84■■■■□ 3.17
RC3H1Q5TC82 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
RC3H1Q5TC82 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
RC3H1Q5TC82 MIR639-201ENST00000384974 98 ntBASIC34.82■■■■□ 3.16
RC3H1Q5TC82 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.82■■■■□ 3.16
RC3H1Q5TC82 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.82■■■■□ 3.16
RC3H1Q5TC82 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
RC3H1Q5TC82 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC34.79■■■■□ 3.16
RC3H1Q5TC82 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
RC3H1Q5TC82 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC34.78■■■■□ 3.16
RC3H1Q5TC82 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
RC3H1Q5TC82 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
RC3H1Q5TC82 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC34.77■■■■□ 3.16
RC3H1Q5TC82 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
RC3H1Q5TC82 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC34.76■■■■□ 3.15
RC3H1Q5TC82 CIB2-204ENST00000557846 934 ntTSL 3 BASIC34.75■■■■□ 3.15
RC3H1Q5TC82 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC34.72■■■■□ 3.15
RC3H1Q5TC82 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
RC3H1Q5TC82 AC108673.1-201ENST00000510422 1159 ntBASIC34.7■■■■□ 3.15
RC3H1Q5TC82 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.7■■■■□ 3.15
RC3H1Q5TC82 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
RC3H1Q5TC82 MIR6090-201ENST00000622481 60 ntBASIC34.68■■■■□ 3.14
RC3H1Q5TC82 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
RC3H1Q5TC82 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC34.66■■■■□ 3.14
RC3H1Q5TC82 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
RC3H1Q5TC82 MIR3648-2-201ENST00000581792 180 ntBASIC34.66■■■■□ 3.14
RC3H1Q5TC82 MIR3648-1-201ENST00000615959 180 ntBASIC34.66■■■■□ 3.14
RC3H1Q5TC82 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC34.66■■■■□ 3.14
RC3H1Q5TC82 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
RC3H1Q5TC82 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC34.66■■■■□ 3.14
RC3H1Q5TC82 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC34.65■■■■□ 3.14
RC3H1Q5TC82 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC34.64■■■■□ 3.14
RC3H1Q5TC82 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
RC3H1Q5TC82 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.63■■■■□ 3.13
RC3H1Q5TC82 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC34.63■■■■□ 3.13
RC3H1Q5TC82 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
RC3H1Q5TC82 GDI1-215ENST00000630693 786 ntTSL 4 BASIC34.61■■■■□ 3.13
RC3H1Q5TC82 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
RC3H1Q5TC82 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
RC3H1Q5TC82 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.6■■■■□ 3.13
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms